Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_G21
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    25   6.7  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    25   8.8  

>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 331 DLV*KLYNYYCHFREYFRFKW 269
           D++ ++YN   HF+E  +F W
Sbjct: 189 DIIHEIYNVGSHFKEVTKFLW 209


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 26  LQLHXALPCSTEHMLFYLPMFIYYLFTVQ*YKTMKLLKINW-FSNE 160
           L++  AL   T H++    + I+YL T+Q     KLL+I W F N+
Sbjct: 137 LEVLRALNFDT-HIVIPHKLAIHYLQTLQLIDNKKLLQITWNFLND 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,184
Number of Sequences: 5004
Number of extensions: 48544
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)