Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_G20
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178...    34   0.14 
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185...    33   0.24 
11_01_0361 + 2772193-2772334,2773457-2773587,2773872-2773985,277...    31   1.3  
03_03_0184 + 15228045-15228405,15228725-15228883,15228984-152292...    30   2.2  
01_06_0642 + 30811708-30811768,30812256-30812305,30812455-308129...    30   2.2  
05_01_0520 - 4492182-4492780,4496886-4497951                           28   6.9  
02_02_0146 - 7171656-7172044,7172383-7175008                           28   6.9  
02_01_0091 + 646299-649082                                             28   6.9  
04_01_0590 + 7793958-7794148,7794826-7794967,7799292-7800548           28   9.1  
02_01_0607 - 4549248-4549290,4550193-4550337,4550438-4551185,455...    28   9.1  

>12_01_0237 +
           1782593-1782778,1784942-1784996,1785086-1787028,
           1787103-1787261,1787432-1787603,1787705-1788003,
           1788278-1788583
          Length = 1039

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = -3

Query: 530 DELAYIFEPLDTEGKSMSGAVSDSDAKVRDNFVDLISKFAHSLNGEENNTKTNLMGLQPY 351
           DELA I    D++   M G V     KVR       S F H +   E +T+ N+ G+  Y
Sbjct: 103 DELALITSKHDSKALKMHGGVDGISIKVR-------SSFDHGIYASELDTRQNIYGVNRY 155

Query: 350 SEE 342
           +E+
Sbjct: 156 AEK 158


>11_01_0240 +
           1852186-1852371,1854183-1854237,1854391-1856267,
           1856342-1856500,1856692-1856863,1856965-1857263,
           1857539-1857844
          Length = 1017

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 26/102 (25%), Positives = 43/102 (42%)
 Frame = -3

Query: 647 FEYVGNLSKGSYFLPGLALTDNSNDMKVYENKMKGPAHGDELAYIFEPLDTEGKSMSGAV 468
           F +V +L + S     +  T     + +Y  +       DELA I    D++   M G V
Sbjct: 42  FRWVPDLDRRSLDKAKVRSTQEKIRVALYVQQAALIFSDDELALITSKHDSKALKMHGGV 101

Query: 467 SDSDAKVRDNFVDLISKFAHSLNGEENNTKTNLMGLQPYSEE 342
                KVR       S F H +   + +T+ N+ G+  Y+E+
Sbjct: 102 DGISKKVR-------SSFDHGICASDLDTRQNIYGVNRYAEK 136


>11_01_0361 +
           2772193-2772334,2773457-2773587,2773872-2773985,
           2774303-2774459,2774577-2775000,2775238-2776030,
           2776182-2776241,2776952-2777593
          Length = 820

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -3

Query: 476 GAVSDSDAKVRDNFVDLISKFAHSLNGEENNTKTNLMG---LQPYSEENDQFLKINDGIK 306
           GA S  + K+++ F+D ++  +H+L G ++    N  G   LQ  S E +   K  +GI 
Sbjct: 153 GAGSSREHKIQNGFIDGMNTKSHALKGNDDAPSGNACGDSELQVLSTEKNVRSKFLNGIT 212

Query: 305 TDK 297
           + K
Sbjct: 213 SAK 215


>03_03_0184 +
           15228045-15228405,15228725-15228883,15228984-15229258,
           15229346-15229594,15229670-15229788,15229874-15229972,
           15230068-15230176,15230281-15230421
          Length = 503

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = -3

Query: 728 TGDALFNFPAYQSVRQWSAGGPAYLYSFEYVGNLSKGSYFLPGL--ALTDNSNDMKVYEN 555
           TGD      AY  +  W    P Y     ++   S G +++P L  A+  N+N   V   
Sbjct: 200 TGDTSTAADAYTFLTNWLERFPEYKGRDFFITGESYGGHYIPQLANAILSNNNITNVTII 259

Query: 554 KMKGPAHGDELAYIFEPLDT 495
            +KG A G+  AY+ +  +T
Sbjct: 260 NLKGVAIGN--AYLDDSTNT 277


>01_06_0642 +
           30811708-30811768,30812256-30812305,30812455-30812926,
           30813237-30813596,30813694-30814101,30814383-30814453,
           30814553-30814629,30814741-30814888,30815878-30816039,
           30816119-30816304
          Length = 664

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -3

Query: 728 TGDALFNFPAYQSVRQWSAGGPAYLYS 648
           T DA F  P Y  VR +SAG   Y YS
Sbjct: 313 TSDAFFISPGYHPVRLFSAGSHGYPYS 339


>05_01_0520 - 4492182-4492780,4496886-4497951
          Length = 554

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
 Frame = -3

Query: 545 GPAHGDELAYIFEPLDTEGKS-----MSGAVSDSDAKVRDNFVDLISKFAHSLNGEENNT 381
           G  H   + Y+   +D EG S     M   + D D  V D FVDL     + +N +  + 
Sbjct: 455 GMLHLITMGYVVAVVDVEGNSWRTIPMPQTLDDPDCNVDDGFVDLSQGRLYFVNTDRYDL 514

Query: 380 KTNL--MGLQPYSEE 342
             +L    LQ YS +
Sbjct: 515 YNSLSVWVLQDYSSD 529


>02_02_0146 - 7171656-7172044,7172383-7175008
          Length = 1004

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 659 YLYSFEYVGNLSKGSYFLPGLALTDNSNDMKVYENKMKGP 540
           YLY     G++ KG   LP L       D++++ NK+ GP
Sbjct: 317 YLYYNNLTGSIPKGVSMLPNLT------DIRLFNNKLSGP 350


>02_01_0091 + 646299-649082
          Length = 927

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = +1

Query: 115 SLFPPRLPNPKLFKGLSTGNLSTGKGIGNLDNKSPIKFLQRAPVSLSAIPPHKPI*QNLN 294
           S F P L +P     L    L     +GNL    P + +   PV+  + PPH P     N
Sbjct: 36  SSFAPALVSPDFHLFLKGTKLIADAKVGNLP-VGPGESISFIPVNAKSAPPHPPSSSAPN 94

Query: 295 P 297
           P
Sbjct: 95  P 95


>04_01_0590 + 7793958-7794148,7794826-7794967,7799292-7800548
          Length = 529

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 101 GCLMVVCFLRDCLIPNCSKDYLPATCPLARVS 196
           G + ++CF    L P+C +D+ P  CP  +V+
Sbjct: 372 GHVAIMCFT---LCPHCEEDHPPGECPTRKVT 400


>02_01_0607 -
           4549248-4549290,4550193-4550337,4550438-4551185,
           4551504-4551980,4552066-4552374
          Length = 573

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 554 KMKGPAHGDELAYIFEPLDTEGKSMSGAVSDSDAKVRDNFVDLISKFAHSLNGEENNTK 378
           + +GP   D+L  IF      G S S   + S  +  D+ V  + K A ++N E+N  K
Sbjct: 120 RKQGPKFLDDLHIIFGKSHVSGASASCPGNVSSDEASDDDVAEVPKPAETVNPEKNKRK 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,648,771
Number of Sequences: 37544
Number of extensions: 481765
Number of successful extensions: 1162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)