Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_G19
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 233 3e-62
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 40 4e-04
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 36 0.009
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 29 0.60
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 29 0.60
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 29 1.0
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 28 1.4
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 28 1.4
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 27 2.4
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 27 2.4
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 27 2.4
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 27 3.2
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 27 3.2
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 27 3.2
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 27 3.2
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 27 4.2
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 27 4.2
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 5.6
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 26 5.6
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 26 5.6
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 7.4
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 26 7.4
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 9.7
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 9.7
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 9.7
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.7
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 25 9.7
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 9.7
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 25 9.7
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 233 bits (569), Expect = 3e-62
Identities = 118/284 (41%), Positives = 176/284 (61%), Gaps = 21/284 (7%)
Frame = -3
Query: 814 INRXATCVKWSPMENKFAVGSGXRLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNN 635
+NR AT V+WSP E+KFAVGSG R+IS+CYFE+EN+WWVSKH+K+P+RST+ S+DWHPNN
Sbjct: 99 LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN 158
Query: 634 ILLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSKLPLGQLLAEFPNSPSGGGWVHSVSFS 455
+LL AG AD K V SAY++D++ +P +VWGS+LP + AE+P+ GGWVH+V FS
Sbjct: 159 VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPS----GGWVHAVGFS 214
Query: 454 ADGNKVAWVAHDSSINV----TDATKGRAVIKLKTEYLPFLGCSWITNNSLIVAGHSCIP 287
GN +A+ HDSS+ + RA+I +K LP W ++++ AG++ P
Sbjct: 215 PSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSP 274
Query: 286 LL-------YCHDGDDIKYVAKLDNTQ-------RKESGGLS--AMKK-FQSLDRHARIE 158
+L + H D +K T R+E G +S A++ F+++D +
Sbjct: 275 ILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ 334
Query: 157 TSDTFLDSIHQNAISCINIYKGTKSHTNKFSTSGLDGQLXIWDL 26
S + L ++HQN I+ + Y GT + F++SG DG++ +W L
Sbjct: 335 -SISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377
Score = 33.9 bits (74), Expect = 0.028
Identities = 16/66 (24%), Positives = 27/66 (40%)
Frame = -3
Query: 811 NRXATCVKWSPMENKFAVGSGXRLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNI 632
++ TCV W+P N+ S R + Y ++ + W + + T + W PN
Sbjct: 55 DKIVTCVDWAPKSNRIVTCSQDRNAYV-YEKRPDGTWKQTLVLLRLNRAATFVRWSPNED 113
Query: 631 LLVAGS 614
GS
Sbjct: 114 KFAVGS 119
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = -3
Query: 724 FEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVF 590
+E++ N W VT +DW P + +V S D V+
Sbjct: 38 YEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY 82
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 39.9 bits (89), Expect = 4e-04
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -3
Query: 475 VHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPFLGCSWITNNSLIVA 305
V+ SFS DG +A + DSS+ + D G+ + L+ C+W T++ L+V+
Sbjct: 392 VNHASFSPDGRCIATASFDSSVRLWDGKTGKFLATLRGHVAAVYQCAWSTDSRLLVS 448
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 664 VTSIDWHPNNILLVAGSADFKVRVFS 587
V ++DW P+ + +G AD VR++S
Sbjct: 476 VFAVDWSPDGQRVASGGADKAVRIWS 501
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 35.5 bits (78), Expect = 0.009
Identities = 26/74 (35%), Positives = 37/74 (50%)
Frame = -3
Query: 808 RXATCVKWSPMENKFAVGSGXRLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNIL 629
R + VKW+ A S + I I FEK S K + V+SID++P L
Sbjct: 97 RGISQVKWATGSKYLASASDDKTIRIWDFEKR----CSVRCLKGHTNYVSSIDFNPLGTL 152
Query: 628 LVAGSADFKVRVFS 587
LV+GS D VR+++
Sbjct: 153 LVSGSWDETVRIWN 166
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 29.5 bits (63), Expect = 0.60
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 88 KSHTNKFSTSGLDGQLXIWDLDTLERS 8
K+ NKF+T G D ++ IW L T E S
Sbjct: 28 KNSLNKFATCGGDSKIRIWQLITSESS 54
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/42 (23%), Positives = 24/42 (57%)
Frame = -3
Query: 706 WWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFSAY 581
+W K + + + S + + W ++ L+AG+ D +R++ A+
Sbjct: 117 YWKVKIVCRSMGSEIYDLCWSVDSNFLIAGAMDNSLRLYDAH 158
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 29.5 bits (63), Expect = 0.60
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -3
Query: 793 VKWSPMENKFAVGSGXRLISICYFEKENNWWVSKHIKKPIRS-TVTSIDWHPNNILLVAG 617
V +SP ++KF S + + F ++ +K V ++DWHP+ LL +G
Sbjct: 170 VAFSPNDSKFVTASDDGSLKVWNFHMS-----TEELKLTGHGWDVKTVDWHPSKGLLASG 224
Query: 616 SADFKVR 596
S D V+
Sbjct: 225 SKDNLVK 231
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -3
Query: 796 CVKWSPMENKFAVGSGXRLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAG 617
C+ WS N A S + + I + E++ + + + V + WHP LLV+G
Sbjct: 383 CIAWSCNGNYLATCSRDKSVWI-WEATEDDEFDCLAVLQEHTQDVKVVTWHPTEDLLVSG 441
Query: 616 SAD 608
S D
Sbjct: 442 SYD 444
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 148 TFLDSIHQNAISCINIYKGTKSHTNKFSTSGLDGQLXIWDLDT 20
T D H + +SC+ + T F ++G D + +WDL+T
Sbjct: 141 TITDGGHSDWVSCVRFSPNPDNLT--FVSAGWDKAVKVWDLET 181
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 664 VTSIDWHPNNILLVAGSADFKVRVF 590
V S+DWHP ++++ SAD + V+
Sbjct: 271 VMSVDWHPTKEMILSSSADSSMIVW 295
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = -3
Query: 331 ITNNSLIVAGHSCI--PLLYCHDGDDIKYVAKLDNTQRKESGGLSAMKKFQSLDRHARIE 158
+ N L+ A S + P+LYCHD D +Y+ L S + + K S+ + +
Sbjct: 216 LITNELLRAIESLLRRPMLYCHDPADYQYLLILLENPLLNSKSKNIVNKSSSILKRI-LG 274
Query: 157 TSDTFLDSIHQNAISC 110
+ H ISC
Sbjct: 275 VLSNLNEKTHHFFISC 290
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = -3
Query: 742 LISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFSAYIKDIED 563
LIS+ FE++ + ++ +R S + P +LLVAG D +V Y+K++++
Sbjct: 229 LISVNRFERKKDIRLAIDAFSALRDL--SANRFPEYLLLVAGGYDIRVSENRRYLKELQE 286
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 27.5 bits (58), Expect = 2.4
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Frame = -3
Query: 415 SINVTDAT--KGRAVIKLKTEYLPFLGCSWITNNSLIVAGHSCIPLLYCHDGDDIKYVAK 242
SINV+ +T K VIK T P+L ++ +N+ +++ HS P + D +
Sbjct: 47 SINVSKSTTKKSSVVIKPSTITAPWLENEYLDSNTSLLSVHSIQP-SFIGMSD---FAIG 102
Query: 241 LDNTQRKESGGLSAMKKFQSLDRHARIETSDTFLDSIHQNAISCINIYKGTKSHTNKFST 62
LD + ++ + FQ L A+ TS T H++ I+ IY K + K T
Sbjct: 103 LDPSLKRILPEIRFRLDFQHLKSIAKGATS-TIKVVTHRDKITDAKIYYAAKVY-RKTKT 160
Query: 61 S 59
S
Sbjct: 161 S 161
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 685 KKPIRSTVTSIDWHPNNILLVAGSADFKVRVF 590
K P +V + WHPN +L G D +V+
Sbjct: 296 KLPHSDSVLTGSWHPNGNILATGGQDTTAKVW 327
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 3.2
Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 3/155 (1%)
Frame = -3
Query: 469 SVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPFLGCSWITNNSLIVAGHSCI 290
S S DG +A+ + D I V D + +L T+ L + N IV+GH
Sbjct: 108 SSCISPDGQTIAFTSVDGRIAVWDNPSDCKISELDTKGKFGLCIDYSPNGRFIVSGHQTG 167
Query: 289 PLLYCHDGDDIKYVAKLDNTQRKESGGLSAMKKFQSLDRHARIETSDTFL--DSIHQNAI 116
L + +T S S + +++ T L D + Q
Sbjct: 168 QLFLISTETGRLFHVLSGHTSPVRSVAFSPGSTLLAAAGDSKMITIYDVLSGDQVGQLRG 227
Query: 115 SCINIYKGTKSHTNKFSTSG-LDGQLXIWDLDTLE 14
I+ + S ++G++ IWD+DT+E
Sbjct: 228 HAAWIFAVAFNPVGDLLLSADVEGKIKIWDIDTME 262
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 145 FLDSIHQNAISCINIYKGTKSHTNKFSTSGLDGQLXIWDLDTLERSFE 2
F D H+ +I I+I+ ++ +T GLDG + IW + + R E
Sbjct: 12 FDDRGHRLSIFSIHIHPDG----SRIATGGLDGTIRIWSTEAINRENE 55
Score = 25.4 bits (53), Expect = 9.7
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = -3
Query: 667 TVTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPG-PNVWGSKLPLGQLLAEFPNSP 491
TVTS+ + PN L +GS D RV + K+ E PG + +GS + +
Sbjct: 76 TVTSVRFSPNGQYLASGSDD---RVVIIWHKE-EAIPGLGSTFGSGEKHTENWRSYRRLL 131
Query: 490 SGGGWVHSVSFSADGNKVAWVAHDSSINVTDAT 392
+ + +S D V V DSSI V + T
Sbjct: 132 GHDNDIQDLCWSYDSQLVVSVGLDSSIIVWNGT 164
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -1
Query: 183 PWIVMLVSRPAIRSWTRYTRTLSRASIFTKELNRTLTSSVLQVSTASSXYGT 28
P L S PAI + TRY+ + F +L++ + S + + GT
Sbjct: 218 PSTTQLPSNPAINATTRYSSLNANTQKFLDDLDKEIFSQIQLAEELQTKLGT 269
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 799 TCVKWSPMENKFAVGSGXRLISICYF 722
TCV WSP A+G L+SI F
Sbjct: 368 TCVTWSPDGKFIAIGGKDDLVSIYSF 393
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 70 FSTSGLDGQLXIWDLDTLER 11
FST+G DG WD D+ +R
Sbjct: 269 FSTAGSDGTFSFWDKDSHQR 288
Score = 26.2 bits (55), Expect = 5.6
Identities = 28/102 (27%), Positives = 44/102 (43%)
Frame = -3
Query: 688 IKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSKLPLGQLLA 509
+ +P +++ + + P L A S D KVR++ V + +G+ L
Sbjct: 25 VAQPPEDSISDLAFSPQAEYLAASSWDSKVRIYE-------------VQATGQSIGKALY 71
Query: 508 EFPNSPSGGGWVHSVSFSADGNKVAWVAHDSSINVTDATKGR 383
E G V SV++S DG KVA + D S V D G+
Sbjct: 72 EHQ------GPVLSVNWSRDGTKVASGSVDKSAKVFDIQTGQ 107
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 664 VTSIDWHPNNILLVAGSADFKVRVFS 587
V I +HP L V+G D+KV V++
Sbjct: 56 VRGIAFHPTQPLFVSGGDDYKVNVWN 81
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -3
Query: 475 VHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPFLGCSW 332
V+++ S DG +A + D +I + D++ G V L+ CS+
Sbjct: 468 VNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRRGVWACSF 515
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 553 PNVWGSKLPLGQLLAEFPNSPSGG 482
PN G + + A+FPNS +GG
Sbjct: 757 PNTQGINTEIKDMAAQFPNSQTGG 780
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 688 IKKPIRSTVTSIDWHPNNILLVAGSADFKVRVFS 587
+K I + VT+I PN+ + GS D +RV+S
Sbjct: 438 LKLEIENGVTAIAISPNDQFIAVGSLDQIIRVWS 471
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -3
Query: 727 YFEKENNWWVSKHIKKPIRSTVTSID 650
YF+++N W + K KK ++ ++TS+D
Sbjct: 30 YFDEDNIWDLDK-FKKNLKVSITSLD 54
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 637 YWDANQ*MSQSNEWA 681
+WDAN +SQ N+W+
Sbjct: 135 HWDANVTLSQENKWS 149
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 62 STELVSVRFSSFVNIDARDSVLVYRVQERIAGLDTSMTI 178
STE S +F DSVL+Y + + I GL+T++ I
Sbjct: 45 STEF-SNALHTFGRFSDNDSVLIYDLCKSIIGLETNLGI 82
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 154 SDTFLDSIHQNAISCINIYKGTKSHTNKFSTSGLDGQLXIWDLD 23
SD S ISC ++ G+ +N T G L +WD++
Sbjct: 79 SDLLQKSTQTKHISCNDVKWGSSFASNLIFTCSPLGNLNVWDVN 122
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 664 VTSIDWHPNNILLVAGSAD 608
V SI WHPNN +A + D
Sbjct: 216 VNSIAWHPNNATRLATAID 234
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 545 HIRSRLIFDILDIGREDSYFEVSRASDEQNVIGMP 649
H++ RLIFD++ + + V++A+ V+G P
Sbjct: 649 HLQERLIFDLMALPNQAWENIVAQAAQNAQVLGDP 683
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Frame = -3
Query: 673 RSTVTSIDWHPN--NILLVAGSADFKVRVFSAYIK-DIEDQ 560
R+ + SI+WHPN +++ V G AD ++ ++ ++ D E+Q
Sbjct: 387 RAPIYSIEWHPNEDSVIGVVG-ADNQISLWDLSVELDEEEQ 426
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 9.7
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -3
Query: 193 KFQSLDRHARIETSDTFLDSIHQNAISCINIYKGTKSHTNKFSTSGLDGQLXIWDL 26
KF D + T +D+ H N + + K S +N+F T G D L IW L
Sbjct: 471 KFWQFDSVQKTWVLMTRIDNPHGN-LEVVTALKMMTS-SNRFITVGTDATLRIWAL 524
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,541,315
Number of Sequences: 5004
Number of extensions: 76781
Number of successful extensions: 297
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -