Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_G19
(816 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical ... 294 6e-80
Z72502-4|CAA96589.1| 750|Caenorhabditis elegans Hypothetical pr... 34 0.11
AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore... 31 0.99
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 31 0.99
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 31 1.3
AC006794-2|AAK68505.2| 622|Caenorhabditis elegans Hypothetical ... 31 1.3
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 30 1.7
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 30 1.7
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 30 1.7
U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical pr... 30 2.3
U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical pr... 30 2.3
U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical pr... 30 2.3
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr... 30 2.3
AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical ... 30 2.3
AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical ... 29 3.0
AF067942-4|AAG45573.2| 324|Caenorhabditis elegans Hypothetical ... 29 4.0
Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z74475-4|CAD01086.1| 185|Caenorhabditis elegans Hypothetical pr... 29 5.3
AF067944-4|AAC17670.2| 279|Caenorhabditis elegans Hypothetical ... 29 5.3
Z68227-4|CAA92518.1| 480|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z68227-3|CAA92519.1| 507|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical p... 28 9.2
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 28 9.2
AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical ... 28 9.2
>AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical
protein Y79H2A.6 protein.
Length = 368
Score = 294 bits (721), Expect = 6e-80
Identities = 137/264 (51%), Positives = 186/264 (70%), Gaps = 2/264 (0%)
Frame = -3
Query: 811 NRXATCVKWSPMENKFAVGSGXRLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNI 632
NR AT VKWSP+ENKFAVGSG +L+S+CY+EKEN+WWVSK IKKPIRSTVT +DWH NN+
Sbjct: 102 NRAATYVKWSPLENKFAVGSGAKLVSVCYYEKENDWWVSKQIKKPIRSTVTCLDWHSNNV 161
Query: 631 LLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSKLPLGQLLAEFPNSPSGGGWVHSVSFSA 452
LL GS DFK RVFSAY+K+++++P PN WG K+P GQL++E+ S GGWVH V+FS
Sbjct: 162 LLAVGSCDFKCRVFSAYVKEVDEKPSPNPWGQKMPFGQLMSEY----SVGGWVHRVAFSP 217
Query: 451 DGNKVAWVAHDSSINVTDAT-KGRAVIKLKTEYLPFLGCSWITNNSLIVAGHSCIPLLYC 275
G ++A+V+HDSS++ D+T + V L T +LPF WIT NS++ AGH C P+L+
Sbjct: 218 SGCRLAFVSHDSSVSFVDSTVDSQKVQNLLTIHLPFTTVEWITENSVVTAGHDCSPVLFV 277
Query: 274 HDGDDIKYVAKLD-NTQRKESGGLSAMKKFQSLDRHARIETSDTFLDSIHQNAISCINIY 98
D +K V KLD + K S SA++ F+++DR+ E + L ++HQN I+ I +
Sbjct: 278 VSQDVLKEVCKLDVPSAAKSSTVNSALQLFKNIDRNNAAEKINVALKTLHQNRITQILPH 337
Query: 97 KGTKSHTNKFSTSGLDGQLXIWDL 26
GT + KF+T G DG + +WDL
Sbjct: 338 SGTVGNVVKFTTCGTDGIVALWDL 361
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = -3
Query: 799 TCVKWSPMENKFAVGSGXRLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVA 620
TC W+ + AV + I I FE N W S H VT +DW +V+
Sbjct: 18 TCHAWNKDRTQIAVSASSNDIHI--FEWRNGDWQSIHTLSEHDLPVTGLDWGTKTNRIVS 75
Query: 619 GSAD 608
S D
Sbjct: 76 CSQD 79
>Z72502-4|CAA96589.1| 750|Caenorhabditis elegans Hypothetical
protein C08B6.7 protein.
Length = 750
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -3
Query: 487 GGGWVHSVSFS-ADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPFLGCSWITNNSLI 311
G G +H SFS +DG +A V+HD + + + + +K+ + L SW + LI
Sbjct: 303 GEGSIHQFSFSGSDGKMMATVSHDGFLRIFNYHAQELLAVMKSYFGGLLTLSWSPDAKLI 362
Query: 310 VAG 302
G
Sbjct: 363 ATG 365
>AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform b protein.
Length = 211
Score = 31.1 bits (67), Expect = 0.99
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 799 TCVKWSPMEN--KFAVGSGXRLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNN 635
TCV ++P + A S I I ++ +N W+S I+K V S+ W P +
Sbjct: 108 TCVAFAPHQYGLMLASASADGDIGILRYDNSSNEWISSKIQKCHEQGVNSVCWAPGS 164
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 31.1 bits (67), Expect = 0.99
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -3
Query: 799 TCVKWSPMEN--KFAVGSGXRLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNN 635
TCV ++P + A S I I ++ +N W+S I+K V S+ W P +
Sbjct: 108 TCVAFAPHQYGLMLASASADGDIGILRYDNSSNEWISSKIQKCHEQGVNSVCWAPGS 164
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -3
Query: 772 NKFAVGSGXRLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSADFKVRV 593
N G + + + +EKE K K I + V HP+NI ++ SAD +RV
Sbjct: 222 NLSLTGGIDKTVVLYDYEKEQVMQTFKGHNKKINAVVL----HPDNITAISASADSHIRV 277
Query: 592 FSA 584
+SA
Sbjct: 278 WSA 280
>AC006794-2|AAK68505.2| 622|Caenorhabditis elegans Hypothetical
protein Y50D4A.4 protein.
Length = 622
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Frame = -3
Query: 469 SVSFSADGNKVAWVAHDSSINVT--DATKGRAVIKLKTEYL---PFLGCSWITNNSLIVA 305
+V FS DG A ++ +V + T+ ++L P L W+TNN L++
Sbjct: 32 TVKFSPDGRLCAMQRTPTTADVVFLEKTETSLCLELTVNTKSKEPLLAVEWVTNNQLLLV 91
Query: 304 GHSCIPLLYCHDGDDIKYVAKLDN 233
+ LLY ++ + K N
Sbjct: 92 NNHSAELLYINEDKKSSKLLKATN 115
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = -3
Query: 526 LGQLLAEFPNSPSGGGWVHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPF 347
+G E SP G G +++ GNK+A + ++ + DA G+ +T
Sbjct: 1229 VGGWTCELKVSP-GPGLTRAITVRDKGNKMAVALSNGTLAILDARNGKINALAQTNSTHT 1287
Query: 346 LGCSWITNNSLIV 308
+ +W+++ L+V
Sbjct: 1288 VSVNWLSDTRLLV 1300
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = -3
Query: 526 LGQLLAEFPNSPSGGGWVHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLPF 347
+G E SP G G +++ GNK+A + ++ + DA G+ +T
Sbjct: 1229 VGGWTCELKVSP-GPGLTRAITVRDKGNKMAVALSNGTLAILDARNGKINALAQTNSTHT 1287
Query: 346 LGCSWITNNSLIV 308
+ +W+++ L+V
Sbjct: 1288 VSVNWLSDTRLLV 1300
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 160 ETSDTFLDSIHQNAISCINIYKGTKSHTNKFSTSGLDGQLXIWDL 26
E S+ + S H+ A++CI S F+T G DG + +WD+
Sbjct: 92 EDSEPIMFSGHKKAVNCIEF----SSDGLLFATGGKDGVIVLWDI 132
>U58762-2|AAK39302.1| 722|Caenorhabditis elegans Hypothetical
protein T27F7.2b protein.
Length = 722
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 597 RTLKSAEPATSKMLLGCQSIDVTVERMGFLICLDTHQLFSFSK*QI-DINLXPDPTANL 770
R + S +P TS G QS+++++ +G IC + L S S ++ DI+ PD T N+
Sbjct: 165 RRIDSFQPTTSG---GMQSVELSISVLGVKICCEKTVLMSHSLRRVTDISARPD-TQNI 219
>U58762-1|AAK39301.1| 732|Caenorhabditis elegans Hypothetical
protein T27F7.2a protein.
Length = 732
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 597 RTLKSAEPATSKMLLGCQSIDVTVERMGFLICLDTHQLFSFSK*QI-DINLXPDPTANL 770
R + S +P TS G QS+++++ +G IC + L S S ++ DI+ PD T N+
Sbjct: 175 RRIDSFQPTTSG---GMQSVELSISVLGVKICCEKTVLMSHSLRRVTDISARPD-TQNI 229
>U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical
protein K10D2.1b protein.
Length = 669
Score = 29.9 bits (64), Expect = 2.3
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -3
Query: 664 VTSIDWHPNNILLVAGSADFKVRVFSA 584
V +++W PN L +GS D+++ +++A
Sbjct: 136 VLTVEWSPNGKYLASGSIDYRIIIYNA 162
>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
protein K10D2.1a protein.
Length = 1223
Score = 29.9 bits (64), Expect = 2.3
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -3
Query: 664 VTSIDWHPNNILLVAGSADFKVRVFSA 584
V +++W PN L +GS D+++ +++A
Sbjct: 424 VLTVEWSPNGKYLASGSIDYRIIIYNA 450
>AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical
protein Y18D10A.9 protein.
Length = 337
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = -3
Query: 796 CVKWSPMENKFAVGSGXRLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAG 617
C +S + A S + + +++ ++ VS I +P V + WHP LLV+
Sbjct: 116 CAVFSKSDEFLATCSRDKSVWFWQQDEDEDFSVSS-ILQPHTQDVKQVAWHPTEDLLVSC 174
Query: 616 SADFKVRVF 590
S D +R +
Sbjct: 175 SYDSSIRFY 183
>AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical
protein W07E6.2 protein.
Length = 473
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Frame = -3
Query: 772 NKFAVGSGXRLISICYFEKENNWWVSKHIK--KPIRS---TVTSIDWHPNNILLVAGSAD 608
N+ R I+ F+K W + K +R V + W ++ LLV+GSAD
Sbjct: 364 NQVVFSPDTRYIASASFDKSVKLWCGRTGKYLASLRGHVGPVYQVAWSADSRLLVSGSAD 423
Query: 607 FKVRVFSAYIKDI-EDQPG 554
++VF K + D PG
Sbjct: 424 STLKVFELKTKSLYYDLPG 442
>AF067942-4|AAG45573.2| 324|Caenorhabditis elegans Hypothetical
protein ZK6.6 protein.
Length = 324
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 708 IGGCLSILRSPFVRL*HLLIGIPI 637
+G C SPF+ L H +IGIP+
Sbjct: 255 LGSCFIFFLSPFLNLYHYVIGIPL 278
>Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical
protein R06A4.9 protein.
Length = 809
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = -3
Query: 787 WSPMENKFAVGSGXRLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNILLVAGSAD 608
++P + KFA S + F + + + + + + V IDWHP L+ GS D
Sbjct: 225 FAPTDVKFATASDDGTARVWDFAR----YTEERVLRGHGAEVRCIDWHPTKGLIATGSRD 280
>Z74475-4|CAD01086.1| 185|Caenorhabditis elegans Hypothetical
protein R04F11.5 protein.
Length = 185
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -3
Query: 631 LLVAGSADFKVRVFSAYIKDIEDQPGPNVWGSKLPLGQL 515
LLVA + K+R++S+ +++D P +W + + +G L
Sbjct: 118 LLVASDYNDKLRIYSSQDSNLKDWPWTELWRNIVDIGAL 156
>AF067944-4|AAC17670.2| 279|Caenorhabditis elegans Hypothetical
protein K10C9.3 protein.
Length = 279
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 298 SCIPLLYCHDGDDIKYV 248
SCIPL Y HDG+ Y+
Sbjct: 10 SCIPLAYSHDGEPFDYL 26
>Z68227-4|CAA92518.1| 480|Caenorhabditis elegans Hypothetical
protein F49C12.5b protein.
Length = 480
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 193 KFQSLDRHARIETSDTFLDSIHQNAISCINIYKGTKSHTNKFSTSGL 53
K SL R + TS F+ QN + ++IYK +H N + S +
Sbjct: 122 KPSSLKRDVVVCTSPLFVSEQWQNFLFAVHIYKKFDAHMNLYLVSSI 168
>Z68227-3|CAA92519.1| 507|Caenorhabditis elegans Hypothetical
protein F49C12.5a protein.
Length = 507
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 193 KFQSLDRHARIETSDTFLDSIHQNAISCINIYKGTKSHTNKFSTSGL 53
K SL R + TS F+ QN + ++IYK +H N + S +
Sbjct: 149 KPSSLKRDVVVCTSPLFVSEQWQNFLFAVHIYKKFDAHMNLYLVSSI 195
>Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -1
Query: 306 QATAAFRYCTATTVTILSTSPNSTTLRGRSPGDCLL*RSSSPWIVMLVSRPAIRSWTRYT 127
Q T R +A+T T+ +T P +TT P + SSS + IR+WT T
Sbjct: 113 QTTTTLRTTSAST-TLSTTQPQTTTTT-TIPSTTTMTESSSTSTTASPTTTRIRTWTYTT 170
Query: 126 R 124
R
Sbjct: 171 R 171
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -3
Query: 493 PSGGGWVHSVSFSADGNKVAWVAHDSSINVTDATKGRAVIKLKTEYLP 350
P+ V +VSF+ DG+ +A ++D + + D G+ + L + P
Sbjct: 210 PAHSDPVSAVSFNRDGSLIASGSYDGLVRIWDTANGQCIKTLVDDENP 257
>AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -1
Query: 306 QATAAFRYCTATTVTILSTSPNSTTLRGRSPGDCLL*RSSSPWIVMLVSRPAIRSWTRYT 127
Q T R +A+T T+ +T P +TT P + SSS + IR+WT T
Sbjct: 113 QTTTTLRTTSAST-TLSTTQPQTTTTT-TIPSTTTMTESSSTSTTASPTTTRIRTWTYTT 170
Query: 126 R 124
R
Sbjct: 171 R 171
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,659,633
Number of Sequences: 27780
Number of extensions: 434382
Number of successful extensions: 1389
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -