Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_G14
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    32   0.062
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    26   4.0  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   5.3  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   7.1  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   9.3  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    25   9.3  

>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 32.3 bits (70), Expect = 0.062
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = +2

Query: 416 DQHATEVHGRAVTEHSPQLSLTIHFNNMNIIFNAKCLQEDILHMRCTIARRGFGGQAKQC 595
           D+ +  V  R +TEHS ++S  I + ++ ++F A   Q +  +     A   F G +   
Sbjct: 73  DELSGIVKARYLTEHSSRISFYICYFSIFLLFFAISFQAECYYSLTAYATSAFAGHSLLS 132

Query: 596 TIAVLR*VLN 625
           TIAV   +++
Sbjct: 133 TIAVANNIIS 142


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
 Frame = +2

Query: 104 YQFLNYFNSKQTPKHSQA----DLMQLPNNRW 187
           Y+   Y  S Q  KH Q     DLM LPN  W
Sbjct: 635 YEACGYMISAQPQKHLQERLIFDLMALPNQAW 666


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -2

Query: 456  SVTALPWTSVACWSTIRIQIHSQTVKK*IYQHYLKPRDS*STT 328
            S + + WT++AC +TI      ++VK   Y ++L+  ++ S T
Sbjct: 1651 SYSQILWTAIACLTTIHEDEFIESVKI-AYAYFLRVEETDSAT 1692


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 465 GECSVTALPWTSVACWSTIRIQIHSQTVKK 376
           GEC V   PW     WS I+  +    V K
Sbjct: 270 GECIVHKAPWLFQGVWSIIKSWLDPVVVSK 299


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 154  SRLNATTKQQMALCLSQNGDLLEK 225
            S LN+++  +  +C+   GDLL+K
Sbjct: 1913 SNLNSSSNDRRTMCVKSLGDLLKK 1936


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 538 DVLLQAFCVENDIHVIKVDCETKL 467
           D+ ++   ++ + HVIK DCE +L
Sbjct: 224 DLPIEHEVIQTEYHVIKSDCEAEL 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,236
Number of Sequences: 5004
Number of extensions: 57564
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)