Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_G14
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49944-4|AAA93419.1|  457|Caenorhabditis elegans Neuropeptide re...    30   1.2  
Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical p...    28   6.5  
AF125463-5|AAD12866.1|  317|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF117337-1|AAD22029.1|  277|Caenorhabditis elegans Hus1-like pro...    27   8.6  
AF106587-2|AAC78225.1|  277|Caenorhabditis elegans Human hus1 re...    27   8.6  

>U49944-4|AAA93419.1|  457|Caenorhabditis elegans Neuropeptide
           receptor family protein1 protein.
          Length = 457

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 529 LQAFCVENDIHVIKVDCETKLRRMLGYCSPMDFSC 425
           + AFC  N + V+    +TK+R+M+   S ++ SC
Sbjct: 206 VMAFCYANIVSVLSKRAQTKIRKMVERTSALESSC 240


>Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical
           protein F28D1.9 protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = +3

Query: 513 TQNACRRTSCICVALSPG--GA--SAVRQNNAPLQF 608
           T  A R +  +C+A +PG  GA  S +R+NN  LQF
Sbjct: 462 TGEAIRTSDGLCIACNPGESGAMVSTIRKNNPLLQF 497


>AF125463-5|AAD12866.1|  317|Caenorhabditis elegans Hypothetical
           protein Y49F6C.4 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 490 KVDCETKLRRMLGYCSPMDFSCVLVHYPYTDPFTDSQEID 371
           ++DCE K    L   +P DF C L+   Y +P  D + ++
Sbjct: 184 EMDCEGKSEITLPDINPSDFQC-LLEVLYGEPAMDDENVE 222


>AF117337-1|AAD22029.1|  277|Caenorhabditis elegans Hus1-like
           protein protein.
          Length = 277

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 200 AKMATYLKNNIAKFSFHNNILVFNSLLGQLDD 295
           AKM   + N +A+F+FHN   V + ++G + D
Sbjct: 247 AKM-NIISNRMAEFNFHNEDCVLSYIVGNVSD 277


>AF106587-2|AAC78225.1|  277|Caenorhabditis elegans Human hus1
           related protein 1 protein.
          Length = 277

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 200 AKMATYLKNNIAKFSFHNNILVFNSLLGQLDD 295
           AKM   + N +A+F+FHN   V + ++G + D
Sbjct: 247 AKM-NIISNRMAEFNFHNEDCVLSYIVGNVSD 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,474,558
Number of Sequences: 27780
Number of extensions: 332694
Number of successful extensions: 818
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)