Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_G13
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...   111   8e-26
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    27   2.3  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    26   5.3  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   7.0  

>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score =  111 bits (268), Expect = 8e-26
 Identities = 55/148 (37%), Positives = 85/148 (57%)
 Frame = -1

Query: 779 NTPMAVGAGICLYTPDXNVSQDQCKFLEDLLSSTALCERVEEPTMDTLGVLTACGPAFIY 600
           NT   +   + +  P  N +++  KF E + +      ++ E  +D    +   GPAF+ 
Sbjct: 136 NTASRIRESMSVICPGPNATEEDIKFAEWVFNGIGRSMKLPEKLIDAATAVCGSGPAFVA 195

Query: 599 IVIEALADGAVKQGVPRAMALRHAAQVVVGSGQMVLQTGKHPGLLKDEVCSPAGSTICGV 420
            +IEA+ DG V  G+P   A   AAQ +VG+G+MVLQ G+HP +++++V +PAG TI G+
Sbjct: 196 TMIEAMTDGGVMMGIPFPQAQELAAQTMVGTGRMVLQ-GQHPAMIRNDVSTPAGCTISGL 254

Query: 419 TELENGRLRSTFINAIEAATNRTKDLGK 336
             LE+G++RST    IE AT     LGK
Sbjct: 255 LALEDGKIRSTIARGIEQATKTASGLGK 282


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +2

Query: 434 WNQQENKLHLSIDQDVYRFARPSDRYPLPPVLRDAMPLLEEHLASQHHRLRLLSQY 601
           + +Q+  L  +I+QD+   +    + P   VL + +PLL+E  A +  ++RLL  Y
Sbjct: 359 FEKQQLNLIGAIEQDLSTGSNVEGKVPRS-VLSELLPLLDEGNAEESTKIRLLLLY 413


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/48 (33%), Positives = 19/48 (39%)
 Frame = -1

Query: 491 QTGKHPGLLKDEVCSPAGSTICGVTELENGRLRSTFINAIEAATNRTK 348
           +TGK P  L      P  S    V+   NG L S  +      TN TK
Sbjct: 96  ETGKRPAYLLKPFQPPFHSANSDVSNNSNGALSSNMLKTHAHHTNSTK 143


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 473 GLLKDEVCSPAGSTICG 423
           G+L D V SP G T CG
Sbjct: 174 GMLYDPVVSPCGHTFCG 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,702
Number of Sequences: 5004
Number of extensions: 63420
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)