Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_G13
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0174 - 41711220-41711408,41711483-41711669,41711690-417118...   113   2e-25
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256...    31   0.78 
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659...    31   1.4  
08_01_0776 + 7533790-7533984,7534234-7534419,7534542-7534631,753...    29   3.1  
03_04_0123 + 17475020-17475243,17475367-17475445,17476295-174763...    29   5.5  

>01_07_0174 -
           41711220-41711408,41711483-41711669,41711690-41711810,
           41712194-41712266,41712494-41712585,41712900-41712948,
           41713189-41713413
          Length = 311

 Score =  113 bits (271), Expect = 2e-25
 Identities = 53/94 (56%), Positives = 69/94 (73%)
 Frame = -1

Query: 617 GPAFIYIVIEALADGAVKQGVPRAMALRHAAQVVVGSGQMVLQTGKHPGLLKDEVCSPAG 438
           GPA+I++ IEA+ADG V  G+PR +AL  A+Q V+G+  MV +TGKHPG LKD V SPAG
Sbjct: 217 GPAYIFLAIEAMADGGVAAGLPRDLALGLASQTVLGAATMVNKTGKHPGQLKDMVTSPAG 276

Query: 437 STICGVTELENGRLRSTFINAIEAATNRTKDLGK 336
           +TI G+ ELE G  R T INA+ AAT R ++L +
Sbjct: 277 TTITGIQELEKGAFRGTLINAVVAATKRCRELSQ 310


>07_01_0353 +
           2563807-2564496,2564595-2564660,2564853-2564918,
           2565044-2565115,2565196-2565261,2565355-2565417,
           2565505-2565570,2565963-2566062,2567403-2567504,
           2567772-2567995,2568200-2568314,2568653-2568763,
           2568873-2569088,2569426-2569624,2570690-2570790,
           2570872-2570919,2571052-2571236,2571345-2571462,
           2571572-2571699,2571981-2572107,2572529-2572647,
           2572770-2572938,2573078-2573162,2573247-2573320,
           2573449-2573568,2574068-2574251,2574343-2574464,
           2574548-2574755,2574885-2574958,2575047-2575185,
           2575275-2575456,2575852-2576007,2576153-2576284,
           2576508-2576566,2576913-2576945,2577065-2577196,
           2577303-2577479
          Length = 1675

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 376 AFMNVDLNLPFSNSVTPHIVEPAGEQTSSFNRPGCLPVCK 495
           A  N  LN P S SVT  + +  G +TSS ++   +P+ K
Sbjct: 165 AASNATLNSPRSPSVTSSVTKKVGSRTSSMDKGSSMPIRK 204


>02_02_0604 -
           12064451-12065683,12065729-12065827,12065858-12065955,
           12066782-12066924,12067233-12067729
          Length = 689

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 548 LEEHLASQHHRLRLLSQYK*MQVHKQSKLQVCPLLVLQLFHIVQCYS-IDLPKIYIDLVK 724
           +EE ++  H R   +     ++    S  ++ PL  L+ FHI  C S +D+P +   L +
Sbjct: 550 MEELMSLIHLRSLSIEHCDNLEGKGSSSEEIMPLYYLEKFHIKDCKSLLDIPTMPASLEE 609

Query: 725 HCXPVC 742
            C  +C
Sbjct: 610 LCLLLC 615


>08_01_0776 +
           7533790-7533984,7534234-7534419,7534542-7534631,
           7535284-7535368,7535759-7535925,7536250-7536438,
           7537183-7537296,7537391-7537510,7537590-7537712,
           7538217-7538315,7538735-7538791,7539272-7539318,
           7539391-7539534,7540028-7540205,7540663-7540743,
           7540926-7541009,7541416-7541616
          Length = 719

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 648 NGHTWSFDCLWTCIYLYCDRSLSRW 574
           N H W  +CL  C+Y + +  L+RW
Sbjct: 246 NPHMWLQECLSDCLYSFGEPFLTRW 270


>03_04_0123 +
           17475020-17475243,17475367-17475445,17476295-17476393,
           17476499-17476682,17477139-17477206,17477530-17477787,
           17477996-17478049,17478149-17478355,17478507-17478633,
           17479409-17479575
          Length = 488

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 542 PLLEEHLASQHHRLRLLSQYK*MQVHKQSKLQ 637
           P  ++HL +Q HR +L+   +  Q+H Q +L+
Sbjct: 264 PSPQQHLTAQQHRQKLMQTSQQQQLHAQQQLR 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,996,743
Number of Sequences: 37544
Number of extensions: 370626
Number of successful extensions: 907
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)