Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_G13
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67995-1|CAA91943.1|  279|Caenorhabditis elegans Hypothetical pr...   124   7e-29
U58750-5|AAB00645.1|  299|Caenorhabditis elegans Hypothetical pr...    87   2e-17
Z81058-5|CAB02921.1|  274|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF039051-8|AAB94268.3|  309|Caenorhabditis elegans Serpentine re...    28   8.6  

>Z67995-1|CAA91943.1|  279|Caenorhabditis elegans Hypothetical
           protein M153.1 protein.
          Length = 279

 Score =  124 bits (299), Expect = 7e-29
 Identities = 62/149 (41%), Positives = 94/149 (63%)
 Frame = -1

Query: 779 NTPMAVGAGICLYTPDXNVSQDQCKFLEDLLSSTALCERVEEPTMDTLGVLTACGPAFIY 600
           NTP  V AG   +           + +E LLS+      V E  +D +  L+  GP++++
Sbjct: 120 NTPSVVRAGASAFAMGSACRDGDAETVEKLLSTVGFAVEVPEIHIDPVTGLSGSGPSYMF 179

Query: 599 IVIEALADGAVKQGVPRAMALRHAAQVVVGSGQMVLQTGKHPGLLKDEVCSPAGSTICGV 420
            VIE LADG VK G+PR +AL+ AA  ++G+ +MVL+TG HP  LKD+V SPAGS++ G+
Sbjct: 180 AVIEGLADGGVKVGLPRDLALKLAAYTLLGAAKMVLETGIHPAQLKDDVQSPAGSSVYGM 239

Query: 419 TELENGRLRSTFINAIEAATNRTKDLGKR 333
            +LE+G L+   ++A+EAATNR++  G +
Sbjct: 240 HKLESGGLKGVLMDAVEAATNRSRATGDK 268


>U58750-5|AAB00645.1|  299|Caenorhabditis elegans Hypothetical
           protein F55G1.9 protein.
          Length = 299

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 55/159 (34%), Positives = 82/159 (51%), Gaps = 11/159 (6%)
 Frame = -1

Query: 779 NTPMAVGAG---ICLYTPDXNVSQDQ-CKFLEDLLSSTALCERVEEPTMDTLGVLTACGP 612
           N   ++GAG   +C    +  ++QD   +   +        E + E   +    +    P
Sbjct: 137 NVASSIGAGASTMCYEKNEKIMNQDSHIELAREFAECVGTVELIPERCFNPAMAIGGSSP 196

Query: 611 AFIYIVIEALADGAVKQGVPRAMALRHAAQVVVGSGQMVLQTG-------KHPGLLKDEV 453
           A+ ++ IE+LADGAV QG+ RA A R AAQ V+G+ QMVL +        +H G LKD V
Sbjct: 197 AWTFMYIESLADGAVAQGLGRAEAKRLAAQAVLGAAQMVLNSNSGFDIETQHFGSLKDMV 256

Query: 452 CSPAGSTICGVTELENGRLRSTFINAIEAATNRTKDLGK 336
           CSP G+TI GV  LE    R   + A+ AA+ +  ++ K
Sbjct: 257 CSPGGTTIEGVRALEKNGFRYAVMEAVVAASTKADEMAK 295


>Z81058-5|CAB02921.1|  274|Caenorhabditis elegans Hypothetical
           protein F11E6.5 protein.
          Length = 274

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 128 LLL*FLIHTYDLSIIVLNMYDVICYAPFTFFV*IIMFVRMLIAECYIIGHIIF 286
           L L   +HT       +   ++    P   F+  I  V+ +I+ CYI GH++F
Sbjct: 171 LALNLAVHTVMYFYFAVRALNIQTPRPVAKFITTIQIVQFVIS-CYIFGHLVF 222


>AF039051-8|AAB94268.3|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein7 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 704 FLEDLLSSTALCERVEEPTMDTLGVLTACGPAFIYIVIEALADGA 570
           FLE L+  T    R    T++   V T C    ++I I A+A  A
Sbjct: 94  FLESLIQPTMAINRFTVITLNRTNVFTFCRTLLLFIPIIAVASAA 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,367,122
Number of Sequences: 27780
Number of extensions: 366589
Number of successful extensions: 822
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)