Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_G09
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 222 3e-59
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 221 6e-59
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 209 3e-55
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 29 0.48
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 29 0.64
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 29 0.85
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 28 1.1
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 26 4.5
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 4.5
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 6.0
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 25 7.9
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 7.9
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 222 bits (543), Expect = 3e-59
Identities = 108/197 (54%), Positives = 134/197 (68%)
Frame = -2
Query: 605 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 426
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 425 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 246
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 245 XVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRXTKDAGEK 66
V LKPGR YC VGRLS E+GWKY D+V KLE++RK K+ Y+ KL + K A
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSA--AFYQAKLAKQKKIAS-- 181
Query: 65 VSKATTPFTTSIQADGY 15
+K +P + GY
Sbjct: 182 -AKEASPVNQKLSQFGY 197
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 221 bits (541), Expect = 6e-59
Identities = 105/184 (57%), Positives = 130/184 (70%)
Frame = -2
Query: 605 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 426
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 425 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 246
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 245 XVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRXTKDAGEK 66
V LKPGR YC VGRLS E+GWKY D+V KLE++RK K+ Y+ KL + K A K
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSA--AFYQAKLAKQKKIASAK 183
Query: 65 VSKA 54
+ +
Sbjct: 184 AASS 187
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 209 bits (511), Expect = 3e-55
Identities = 93/160 (58%), Positives = 119/160 (74%)
Frame = -2
Query: 605 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 426
K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 425 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 246
NP+RG FHFRAPS+I K VRGM+PHKT RG AL+ L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125
Query: 245 XVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKA 126
V LKP R YC +GRLS E+GWKY+++V KLE++RK K+
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 29.5 bits (63), Expect = 0.48
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 137 KGKAVKRVAYEKKLKRXTKDAGEKVSKATTP 45
KGK V R+ Y+ K D+GE+++K P
Sbjct: 540 KGKTVGRLNYDMKFHAVVPDSGEEITKVDGP 570
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 29.1 bits (62), Expect = 0.64
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 200 RLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRXTKDAGEK 66
R S E K D K E+KR+ K K+ EKK K+ K+ +K
Sbjct: 428 RKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.85
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 578 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 474
H L + AV K++ G K VV+RC+ I + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -2
Query: 158 RKLEDKRKGKAVKRVAYEKKLKRXTKDAGEKVSKATTPFT 39
R + KR+ K +R+AYE+ LKR K EK +K++ T
Sbjct: 647 RIAQQKREEK--RRLAYEESLKRHAKKLHEKKTKSSQDAT 684
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +3
Query: 495 DLFAANHNNFVPFEKDLGDDCRQTAQQMTTAIDHYGLIAKARHFHN 632
D+ A N + L RQ QQM T +YGL+ KAR N
Sbjct: 126 DVNAKNELTLKALKNQLSVSLRQHEQQMETLKGNYGLV-KARKGRN 170
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 313 SLLRAFLPRSVLCGIIPLTVFHRILDGAL 399
S L AFLP+ LC +IPL + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 292 GHPSYVRSLLRAFLPRSVLCGIIP 363
G+ SY+ + L+AFLP++V + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 680 TIGNLNEFGRPMLFRFVVKMTGF 612
++ +L E G P+L RF+ GF
Sbjct: 973 SLAHLGEIGSPLLLRFLATTVGF 995
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 394 ALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEILICSQRTTTTLFPSRRTLAMTA 558
AL+ G ++L+R+ND + +KK+ + LI ++ T R L T+
Sbjct: 304 ALRLIGKGTFGQVYLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTS 358
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,034
Number of Sequences: 5004
Number of extensions: 56517
Number of successful extensions: 151
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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