Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_G09
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   230   6e-61
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   230   6e-61
AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical ...    30   1.4  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  230 bits (563), Expect = 6e-61
 Identities = 108/202 (53%), Positives = 139/202 (68%)
 Frame = -2

Query: 617 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 438
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 437 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 258
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 257 XXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRXTKD 78
                 F L+P R +C VGRLSHE+GW+++DVV KLE KRK K       +KK+ +    
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQ 180

Query: 77  AGEKVSKATTPFTTSIQADGYN 12
           A +  +     +   I+A GYN
Sbjct: 181 AKKNAAPKIAQYQKIIEALGYN 202


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  230 bits (563), Expect = 6e-61
 Identities = 108/202 (53%), Positives = 139/202 (68%)
 Frame = -2

Query: 617 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 438
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 437 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 258
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 257 XXXXXVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRXTKD 78
                 F L+P R +C VGRLSHE+GW+++DVV KLE KRK K       +KK+ +    
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQ 180

Query: 77  AGEKVSKATTPFTTSIQADGYN 12
           A +  +     +   I+A GYN
Sbjct: 181 AKKNAAPKIAQYQKIIEALGYN 202


>AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical
           protein F15E6.9 protein.
          Length = 664

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -2

Query: 218 NYCHVGRLS--HEIGWKYRDVVRKLEDKRKGKAVK-RVAYEKKLKRXTKDAGEKV 63
           +YC  G+ S  H I WKYRD V  ++ K K  A++ R A E K      D  +KV
Sbjct: 284 DYC-TGKTSILHRIQWKYRDAV-IVQAKEKMSAIELRRAIEAKTNVILHDVEQKV 336


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = +2

Query: 164 HHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*EHS 331
           HH      H     H   +G V  R H E     H   +  E GTHH +     H+
Sbjct: 381 HHEHKEGEHHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHA 435



 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
 Frame = +2

Query: 152 AYXQHHGISIQFHGTVCLHDS--NYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*E 325
           A+  HHG     HG    H S  ++G   +  H       H  G+    G HH +  S  
Sbjct: 537 AHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHH--GHHGSHGVHHGHHESHG 594

Query: 326 HSCHA 340
           H  HA
Sbjct: 595 HGHHA 599


>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 110 RQLS*QPCPSSCLQAYXQHHGISIQFHGTVCLHDSNY 220
           R+ S   C S  L  +  HHGI +   G + L D++Y
Sbjct: 322 RKRSSAVCSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,826,046
Number of Sequences: 27780
Number of extensions: 330084
Number of successful extensions: 846
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)