Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_G03
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   0.70 
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    26   2.1  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    24   6.5  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    24   8.6  

>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 27.5 bits (58), Expect = 0.70
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 206  EAPWLRCLSSLCKLNQLASKRSFC*CSYL 292
            +AP L  LS++C  +  + KR FC  +YL
Sbjct: 967  DAPALSLLSAVCAYDYASDKRKFCKENYL 995


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 347 LLSGCGNQENFNLFL-RIKVNKNINKMSAWRQAGLT 243
           LL+G   Q+  N +  +I + K I+ +  WRQ GLT
Sbjct: 261 LLTGPDYQKFVNSYHEQITLKKQISDLQEWRQMGLT 296


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 37  WLTIPSSLWNSFLE 78
           WL+IP+S W++F +
Sbjct: 507 WLSIPASRWSTFYD 520


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 122 RPAHEKD*VRGVS*TSRKLFQSEEGIVNQHA 30
           RPAH     R +S TSR   Q+ E  +N ++
Sbjct: 360 RPAHSAQISRSISKTSRMYRQTAEEPLNSYS 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,444,687
Number of Sequences: 5004
Number of extensions: 25441
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)