Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_G02
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 79 1e-15
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 29 1.0
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 28 1.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 1.8
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 27 2.4
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 27 2.4
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 27 4.2
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 26 5.6
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 9.7
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 25 9.7
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 25 9.7
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 78.6 bits (185), Expect = 1e-15
Identities = 61/247 (24%), Positives = 121/247 (48%), Gaps = 6/247 (2%)
Frame = -1
Query: 744 VDRAEDEVVNAXXXXXXXXXXXSFRPLYFKIYDWAIR----TNVDGHKDRAITFYRLSSA 577
VD E + VN +FRPL+ ++ WA+ T+ G R FY +
Sbjct: 1407 VDNVETQAVNVFLKFVMKLSDTTFRPLFLHLHSWALEDLYETDPSGIVSRQTFFYNFLTI 1466
Query: 576 IAEKLKGLFVLFAAHFMKNAADLLDGCNNTKTEQLYFDDEEKCEILIKYIIKTLHV-VFL 400
+ LK + + A+ + + +LL +T +E +++++ + V F
Sbjct: 1467 FLDTLKSIVTNYYAYVLDDTIELLSS-KDTNSE-------------VRHLVNSSLVSAFE 1512
Query: 399 YDSQQF-VNKNRFETMMQPIVDQLENTVGGILNLKARAIENIIPCVSQFAVATADDSLWK 223
D+++F + RF + +++Q++ +L+ K ++ I+ S VA++ D+ ++
Sbjct: 1513 NDTEEFWMVPARFGKISPVLIEQIQ--YAPLLDDKV-LVKAIVELAS---VASSSDN-FR 1565
Query: 222 LLNYQILLKTRNNDAEIRLTALDCLVAMATQLGSSWLPLLAESVPFLAELLEDGDQRIET 43
+N Q+L R+++ RL A+ + +LG +W+ L +SVPF+AEL+ED D ++ET
Sbjct: 1566 SMNTQLLQYLRSSNINARLLAIQIQTQLYGRLGENWISTLPQSVPFIAELMEDDDDQVET 1625
Query: 42 CXKEAIK 22
E ++
Sbjct: 1626 ATAELVR 1632
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 28.7 bits (61), Expect = 1.0
Identities = 21/90 (23%), Positives = 38/90 (42%)
Frame = -1
Query: 672 RPLYFKIYDWAIRTNVDGHKDRAITFYRLSSAIAEKLKGLFVLFAAHFMKNAADLLDGCN 493
+P + DW+ N + H + + FY S++ E + + H +N N
Sbjct: 1710 KPFQVDLNDWSSELNSNAHLELFMNFYNFSNSHWEPFLEPWKV-GVHISRNP-------N 1761
Query: 492 NTKTEQLYFDDEEKCEILIKYIIKTLHVVF 403
+KT F E+ ++ +I+TLH F
Sbjct: 1762 TSKTAVHVFSREKLDLVITPQLIETLHFGF 1791
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 68 SKSSAKNGTLSANRGSQLLPNCVAIATKQSKAVNLISASLFL 193
SK +GT+ N GS+ P + + ++S +NL + S F+
Sbjct: 87 SKGDIADGTIKVNIGSESHPREIEFSIQKSSKINLHTLSQFV 128
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +1
Query: 469 VKLFGFCVIAAVEQISSVLHEVSREQDEKTF*FLRYSAAQSVECDSSIFVS 621
++L C+I +V+ + V E+S+ ++E+ F Y A + +F+S
Sbjct: 763 IQLIAMCLIDSVQSFNDVSFEISKTEEER-FLLQEYELAVRQHIVTGLFIS 812
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 183 DAEIRLTALDCLVAMATQLGSSWLPLLAESVPFLAELL 70
D + +T LD + + LGS PLLA++ P L +++
Sbjct: 657 DRDFLVTTLDLVSGIIQALGSQVSPLLAQADPPLGQII 694
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -1
Query: 498 CNNTKTE--QLYFDDEEKCEILIKYIIKTLHVVFLYDSQQFVNKNRFETMMQPIVDQLEN 325
C TK + +L DD ++ + + +TL D + + K+RF + +P Q N
Sbjct: 301 CEETKNDLSKLLKDDRLSLQVFVASLEQTLEFESFIDHRFYNTKSRFNSNFEPKERQAYN 360
Query: 324 TVGGI 310
+ +
Sbjct: 361 ALSSV 365
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 26.6 bits (56), Expect = 4.2
Identities = 22/93 (23%), Positives = 41/93 (44%)
Frame = -1
Query: 477 QLYFDDEEKCEILIKYIIKTLHVVFLYDSQQFVNKNRFETMMQPIVDQLENTVGGILNLK 298
QLY E+K + Y I HV Y +Q +++ ++ ++ + + + +
Sbjct: 789 QLY---EKKKSVSQSYYIFVSHVTANYSNQLLFSQSFYQGILDGLCNI--DVPDDKREVV 843
Query: 297 ARAIENIIPCVSQFAVATADDSLWKLLNYQILL 199
AIE ++ F +AT S W YQ++L
Sbjct: 844 EAAIEELLTVYEHFDIATTLLSCWDHQLYQVIL 876
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 26.2 bits (55), Expect = 5.6
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +1
Query: 571 RYSAAQSVEC----DSSIFVSVDVRPNSPIVYLKV*RSETGLRKLQ 696
R+SA QSV C F S+ V+P +VY V TG LQ
Sbjct: 9 RFSANQSVLCLLQRHRVFFSSISVKPRKRMVYCVVSYRGTGFAGLQ 54
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 309 LNLKARAIENIIPCVSQFAVATADDSLWKLLNYQILLKTRN 187
L K I + C+S+ A+ T + + KLL+ QI + N
Sbjct: 1554 LQFKESVIGALYLCLSRRAIRTGNVTFLKLLSQQIAISVSN 1594
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 660 FKIYDWAIRTNVDGHKDRAITFYR 589
FK+Y W N+ KD +T YR
Sbjct: 108 FKLYAWVFGCNLSELKDPDLTHYR 131
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 354 MQPIVDQLENTVGGILNLKARAIENII 274
+QP++ ++E + G IL + R + NI+
Sbjct: 508 LQPLIVEIERSSGNILVVSHRIVSNIL 534
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,190
Number of Sequences: 5004
Number of extensions: 55890
Number of successful extensions: 178
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -