Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_G02
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199...    85   6e-17
02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,366...    40   0.003
01_01_0580 + 4305984-4307282,4308610-4308678                           32   0.47 
09_06_0315 - 22246879-22247643,22247722-22247862,22248509-222485...    29   4.4  
05_06_0096 + 25513535-25514024,25514139-25514236,25514395-255147...    29   4.4  
08_01_0190 - 1583044-1583802                                           28   7.7  

>04_04_0706 + 27419215-27419371,27419521-27419734,27419818-27419913,
            27420006-27420123,27420211-27420384,27420633-27420803,
            27420932-27420987,27421125-27421214,27421296-27421444,
            27421640-27421722,27421830-27421958,27422063-27422137,
            27422248-27422416,27422965-27423104,27423191-27423298,
            27423603-27423783,27424445-27424542,27424639-27424728,
            27424881-27425034,27425376-27425431,27425483-27425533,
            27425651-27425732,27425821-27425995,27426748-27426823,
            27426951-27427121,27427198-27427269,27427350-27427454,
            27427948-27428037,27428703-27428908,27428989-27429190,
            27429294-27429473,27429858-27429925,27430005-27430341,
            27430428-27430637,27430765-27431448,27431537-27431940,
            27432495-27432542,27432777-27433023,27433381-27433602,
            27433796-27434026
          Length = 2122

 Score = 85.0 bits (201), Expect = 6e-17
 Identities = 86/323 (26%), Positives = 152/323 (47%), Gaps = 59/323 (18%)
 Frame = -1

Query: 801  LTALQLRSDAVDKNVDSDVVDRAEDEVVNAXXXXXXXXXXXSFRPLYFKIYDWAI----R 634
            L AL LR   +D   +  +V   E  +++A           +FRPL+ +  +WA     R
Sbjct: 1793 LVALDLRRQHLDSLKNIAIV---EQSIIHAITTLTMKLTEATFRPLFLRTLEWAESEVDR 1849

Query: 633  TNVDGHKDRAITFYRLSSAIAEKLK-------------GLFVLFAAHF---MKNAADLLD 502
            +      DRAI FY+L +++AEK +             G+  LF  +F   ++ +   L 
Sbjct: 1850 STSKRSMDRAIVFYKLVNSLAEKHRLGLVLPISVRNWPGMGSLFTPYFKYLLEGSVQYLS 1909

Query: 501  G-----CNNTKTEQLYFDD---EEKCEI-------LIKYIIKTLHVVFLYDS-QQFVNKN 370
                   +  K ++   +D   E+K ++       L   ++K+LH  FLYD+ Q+ ++ +
Sbjct: 1910 EDDALISSKQKKKKAKLEDAPVEQKDKLSGPKLWNLRALVLKSLHKCFLYDNDQKILDSS 1969

Query: 369  RFETMMQPIVDQ--LENTVGGILNLKARAI----ENIIPCVSQFAVATADDSLWKLLNY- 211
             F+ +++PIV Q  +E         +A ++    E ++ C+ Q AV    D LWK LN+ 
Sbjct: 1970 NFQALLKPIVSQFVIEPPEHFESVPEAPSVDEVDETLVLCLGQMAVTARSDVLWKPLNHE 2029

Query: 210  ----------------QILLKTRNNDAEIRLTALDCLVAMATQLGSSWLPLLAESVPFLA 79
                            Q+L++TR++    ++  L  +  M  QL   ++ LL E++PFLA
Sbjct: 2030 VGTKHYARSSFFLDNGQVLMRTRSDKVRPKMLGLKVVRHMVQQLKEEYVVLLPETIPFLA 2089

Query: 78   ELLEDGDQRIETCXKEAIKKTRT 10
            ELLED +  ++T  +E +K+  T
Sbjct: 2090 ELLEDVELPVKTLAQEIVKEMET 2112


>02_01_0502 -
           3659564-3659660,3659923-3660061,3660161-3660238,
           3660486-3660654,3660757-3660873,3660956-3661102,
           3661203-3661388,3661472-3661720,3662196-3662432,
           3662511-3662673,3662748-3662866,3662976-3663068,
           3663595-3663735,3663813-3663896,3663974-3664084,
           3664162-3664260,3664501-3664623,3664908-3664958,
           3665152-3665275,3665357-3665514,3665595-3665709,
           3665931-3666060,3666163-3666328,3667047-3667136,
           3667650-3667857,3668270-3668439,3668542-3668577
          Length = 1199

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
 Frame = -1

Query: 276 IPCVSQFAVATADDSLWKLLNYQI-LLKTRNNDAEIRLTALDCLVAMATQLGSSWLPLLA 100
           I C++  A   +DD L K     + LLK R+  +EI  T +  + A++  +G  + P LA
Sbjct: 220 ISCIASLAACLSDDLLAKATFEVVQLLKNRSAKSEIARTNIQMIGALSRSVGYRFGPHLA 279

Query: 99  ESVPFLAELLEDGDQRIETCXKEAIKKTRTYI 4
           E+VP L        +  E   + +++   +++
Sbjct: 280 EAVPLLINYCTSASENDEELREYSLQALESFM 311


>01_01_0580 + 4305984-4307282,4308610-4308678
          Length = 455

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 21/80 (26%), Positives = 34/80 (42%)
 Frame = -1

Query: 423 KTLHVVFLYDSQQFVNKNRFETMMQPIVDQLENTVGGILNLKARAIENIIPCVSQFAVAT 244
           ++L V  ++ S+ F  K      + P+   L  T  G++      IE +   V +F +  
Sbjct: 322 RSLSVEEMWASESF--KQMGLPCVVPVSPVLSLTQDGVMYTILNVIEQVPAQVDEFGIVV 379

Query: 243 ADDSLWKLLNYQILLKTRNN 184
            DD L  + NY I    R N
Sbjct: 380 VDDDLVPIANYMIRFDIRRN 399


>09_06_0315 -
           22246879-22247643,22247722-22247862,22248509-22248561,
           22248755-22248919,22249685-22249799,22249937-22250025,
           22250578-22250608
          Length = 452

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 378 NKNRFETMMQPIVDQLENTVGGILNLKAR 292
           NKN F++M + I  ++ N  GG  NLK R
Sbjct: 343 NKNAFDSMQEAIQHKIANAEGGENNLKDR 371


>05_06_0096 +
           25513535-25514024,25514139-25514236,25514395-25514783,
           25515485-25515599,25515816-25515917,25516584-25516734,
           25517162-25517250,25517518-25517566,25517723-25517763,
           25517929-25518116,25518285-25518402,25518900-25519079,
           25519172-25519294,25519368-25519455,25519549-25519679,
           25519768-25519866,25520822-25521253
          Length = 960

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 490 VIAAVEQISSVLHEVSREQDEKTF*FLRYSAAQSVECDSSIFVSVDVRPN 639
           +I  ++ +  + H + +++D   F    Y +   V+ DSS  VS+D RPN
Sbjct: 801 MITPIDYVLCIGHFLGKDEDIYVFFDPEYPSESKVKPDSSGSVSLDRRPN 850


>08_01_0190 - 1583044-1583802
          Length = 252

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 346 WLHHR-FKSIFVDELLAIIQKHHM 414
           W HHR F  ++VDEL +  + HH+
Sbjct: 78  WCHHRSFAPVYVDELYSHPKTHHV 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,244,778
Number of Sequences: 37544
Number of extensions: 333678
Number of successful extensions: 825
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)