Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_G02
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    23   3.4  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    23   3.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   7.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   7.8  

>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 387 QFVNKNRFETMMQPIVDQ-LENTV 319
           QFV++N FE   + + DQ L NTV
Sbjct: 7   QFVSQNNFEEFAKVLGDQNLVNTV 30


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 387 QFVNKNRFETMMQPIVDQ-LENTV 319
           QFV++N FE   + + DQ L NTV
Sbjct: 9   QFVSQNNFEEFAKVLGDQNLVNTV 32


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -2

Query: 770 STRMWTVM*WTELRMKW 720
           +T  W    WT+  +KW
Sbjct: 53  TTNCWVTQIWTDHHLKW 69


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = -2

Query: 767 TRMWTVM*WTELRMKW 720
           T +W  + W ++ M+W
Sbjct: 72  TNLWLKLEWNDVNMRW 87


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 5/17 (29%), Positives = 10/17 (58%)
 Frame = -2

Query: 770 STRMWTVM*WTELRMKW 720
           +T +W    W + ++KW
Sbjct: 68  TTNVWVEQEWNDYKLKW 84


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 5/17 (29%), Positives = 10/17 (58%)
 Frame = -2

Query: 770 STRMWTVM*WTELRMKW 720
           +T +W    W + ++KW
Sbjct: 81  TTNVWVEQRWNDYKLKW 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,906
Number of Sequences: 438
Number of extensions: 3863
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)