Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_F12
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 2.1
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 2.1
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 2.1
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 2.1
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 2.1
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 2.1
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 2.1
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 2.1
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 2.1
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 2.1
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 2.1
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom... 26 3.7
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 26 3.7
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 5.0
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 26 5.0
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 8.7
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 KGVKIMFQDSVTNIHTSEANKSPPARP 151
KG++ Q+ V N HT + NKS +P
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKSRNHKP 970
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 KGVKIMFQDSVTNIHTSEANKSPPARP 151
KG++ Q+ V N HT + NKS +P
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKSRNHKP 970
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 KGVKIMFQDSVTNIHTSEANKSPPARP 151
KG++ Q+ V N HT + NKS +P
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKSRNHKP 970
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 KGVKIMFQDSVTNIHTSEANKSPPARP 151
KG++ Q+ V N HT + NKS +P
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKSRNHKP 970
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 KGVKIMFQDSVTNIHTSEANKSPPARP 151
KG++ Q+ V N HT + NKS +P
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKSRNHKP 970
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 KGVKIMFQDSVTNIHTSEANKSPPARP 151
KG++ Q+ V N HT + NKS +P
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKSRNHKP 970
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 KGVKIMFQDSVTNIHTSEANKSPPARP 151
KG++ Q+ V N HT + NKS +P
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKSRNHKP 970
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 KGVKIMFQDSVTNIHTSEANKSPPARP 151
KG++ Q+ V N HT + NKS +P
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKSRNHKP 970
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 KGVKIMFQDSVTNIHTSEANKSPPARP 151
KG++ Q+ V N HT + NKS +P
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKSRNHKP 970
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 KGVKIMFQDSVTNIHTSEANKSPPARP 151
KG++ Q+ V N HT + NKS +P
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKSRNHKP 970
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 71 KGVKIMFQDSVTNIHTSEANKSPPARP 151
KG++ Q+ V N HT + NKS +P
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKSRNHKP 970
>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 158
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 541 PVKGLYSEVGSRCRRFTNIP 482
P+ GL+ VGSR R+ + IP
Sbjct: 114 PLSGLHQNVGSRTRKSSGIP 133
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 26.2 bits (55), Expect = 3.7
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 523 SEVGSRCRRFTNIPRHNYVYLASILYISPF*LFCKTNFSFHI-SHRLPFELQK 368
SE+ ++ RR +H Y+YLA L+ L C F F++ ++R F L K
Sbjct: 52 SEIEAKKRRRK---KHRYIYLAVCLFFLASVLSCAIIFRFYLHTNRENFSLFK 101
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 505 CRRFTNIPRHNYVYLASILYI 443
C +F +PR NY L S L++
Sbjct: 860 CDQFATVPRENYANLVSQLHV 880
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 131 KSPPARPSNKTNCYTYKK 184
K+PPA PS+K N YK+
Sbjct: 203 KAPPADPSSKENAELYKE 220
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 233 EDQNVNFG--LI*TMNVFLNT-INASRACAPLLLPWSLNLFKFRHRHSLL 373
E++N F + ++ +N+ + A+ + LLL W L+ FR+RH LL
Sbjct: 322 ENENATFEQQALVVASIIINSHLLATNSNGMLLLTWLLDNSFFRNRHRLL 371
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,399
Number of Sequences: 5004
Number of extensions: 44207
Number of successful extensions: 139
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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