Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_F12
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0104 - 22810884-22811433,22811544-22811752                       29   2.2  
11_03_0084 + 9696368-9696554,9696648-9696718,9696821-9696901,969...    29   2.9  
04_04_0455 - 25354071-25354128,25354129-25354307                       28   5.0  
02_01_0562 + 4129852-4130235,4130355-4130453,4131046-4131146,413...    28   6.7  
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826...    27   8.8  

>04_04_0104 - 22810884-22811433,22811544-22811752
          Length = 252

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -1

Query: 82  FDPLGKVGLTRNSVYLRSTDDXTILK 5
           FDPLG  G TR+ VY+  TD    LK
Sbjct: 194 FDPLGLGGETRDGVYIPDTDKLDRLK 219


>11_03_0084 +
           9696368-9696554,9696648-9696718,9696821-9696901,
           9697139-9697206,9697335-9697437,9700422-9700567,
           9700686-9700803,9701693-9701797,9702333-9702434,
           9702518-9702655,9703475-9703603,9703682-9703762,
           9703883-9703957,9704861-9705028,9705125-9705242,
           9705345-9705409,9705547-9705637,9705801-9705885,
           9706006-9706084,9706317-9706414,9707029-9707137,
           9707224-9707292,9707770-9707835,9707952-9708041,
           9708416-9708526
          Length = 850

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 606 GPEEMXAVMTAKDVTCTRVYKVQXKDSTPRSGVGAADSRTS 484
           G + +   M AKD T  +V +V  KD    S VG ADS+ +
Sbjct: 159 GMDVVEMAMWAKDNTTVKVTQVSTKDGPIESLVGEADSQVA 199


>04_04_0455 - 25354071-25354128,25354129-25354307
          Length = 78

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 102 LQTYIRLKL-IKVHPPAPAIKQTVIHTKKIHL 194
           L++++   L I +HPP PA  +  +H + IHL
Sbjct: 3   LKSFLNWSLAIALHPPPPAALKNHVHVQAIHL 34


>02_01_0562 +
           4129852-4130235,4130355-4130453,4131046-4131146,
           4131229-4131300,4131712-4131802,4132005-4132085,
           4132263-4132331,4132634-4132690,4132776-4132898,
           4133000-4133038,4133255-4133380
          Length = 413

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 481 RHNYVYLASILYISPF*LFCKTNFSFHISHRLPFELQKR 365
           RH  + LA  LY + F L+CK      +  R+P  + KR
Sbjct: 256 RHALLILADHLYYNKFELYCKPVTGITVGTRVPGFIPKR 294


>10_05_0026 +
           8262237-8262899,8263300-8263509,8263599-8265480,
           8265508-8265704,8275672-8275824
          Length = 1034

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 318 SGAHAREAFIVFKNTFIVYIKPKLTF*SSGRSHSMFSIAY 199
           + A A++A  V   TF+V + P      SG +HS  S+++
Sbjct: 549 AAAEAQDAPDVILGTFLVNLVPATVLFDSGATHSFLSMSF 588


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,610,747
Number of Sequences: 37544
Number of extensions: 272792
Number of successful extensions: 600
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)