Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_F12
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69662-6|CAA93501.1|  283|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U50311-5|AAX22295.1|  299|Caenorhabditis elegans Serpentine rece...    29   2.6  
AC024791-20|AAO12400.1|  574|Caenorhabditis elegans Hypothetical...    29   2.6  
AC024791-19|AAF60657.2|  618|Caenorhabditis elegans Hypothetical...    29   2.6  
U39744-1|AAK18882.1|  471|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>Z69662-6|CAA93501.1|  283|Caenorhabditis elegans Hypothetical
           protein F56D5.10 protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = -2

Query: 423 VKLILVFTSVIVYRSNCKSEWR*RNLNKFSDHGNNSGAHAREAFIVFKNTFIVYI 259
           V +++    +I Y SNC       N N  + +  ++ A +R    +F+N F++Y+
Sbjct: 103 VTILITIWLLIPYFSNCSL-----NFNALTSYHESACAPSRHPITLFQNNFLIYV 152


>U50311-5|AAX22295.1|  299|Caenorhabditis elegans Serpentine
           receptor, class sx protein34, isoform c protein.
          Length = 299

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 501 ADSRTSRGTIMFI*HLFYTLALSSFFVKLILVFTSVIVYRSNC 373
           ADS  + G I+F  HLF+ +  S F   L+ + T + V   +C
Sbjct: 51  ADSLHNYGQIIFTAHLFFDIQTSHFVCTLLNIPTLIGVISGSC 93


>AC024791-20|AAO12400.1|  574|Caenorhabditis elegans Hypothetical
           protein Y47G6A.5b protein.
          Length = 574

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 84  SCSKIPLQTYIRLKLIKVHPPAPAIKQTVIHTKKIHL 194
           SC K+P +  I  KL K  PP P  +   +  KKIH+
Sbjct: 244 SCEKVPGEIQICTKLTKAAPPLPE-QTEYMAMKKIHV 279


>AC024791-19|AAF60657.2|  618|Caenorhabditis elegans Hypothetical
           protein Y47G6A.5a protein.
          Length = 618

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 84  SCSKIPLQTYIRLKLIKVHPPAPAIKQTVIHTKKIHL 194
           SC K+P +  I  KL K  PP P  +   +  KKIH+
Sbjct: 288 SCEKVPGEIQICTKLTKAAPPLPE-QTEYMAMKKIHV 323


>U39744-1|AAK18882.1|  471|Caenorhabditis elegans Hypothetical
           protein C03F11.1 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -1

Query: 202 VLNKCIFFVCITVCFIAGAG--GWTFI 128
           V+  CI F+C  +C + G+G   WTFI
Sbjct: 157 VIQFCIEFICCGICPLPGSGEMKWTFI 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,606,415
Number of Sequences: 27780
Number of extensions: 251292
Number of successful extensions: 601
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)