Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_F10
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   3.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   3.9  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   3.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   3.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   3.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   3.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.9  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   9.1  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 88  LATTLSKNNIHNSNQRGN 141
           + ++LS N IHN+N + N
Sbjct: 80  IISSLSNNTIHNNNYKYN 97


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 88  LATTLSKNNIHNSNQRGN 141
           + ++LS N IHN+N + N
Sbjct: 80  IISSLSNNTIHNNNYKYN 97


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 88  LATTLSKNNIHNSNQRGN 141
           + ++LS N IHN+N + N
Sbjct: 81  IISSLSNNTIHNNNYKYN 98


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 88  LATTLSKNNIHNSNQRGN 141
           + ++LS N IHN+N + N
Sbjct: 81  IISSLSNNTIHNNNYKYN 98


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 88  LATTLSKNNIHNSNQRGN 141
           + ++LS N IHN+N + N
Sbjct: 81  IISSLSNNTIHNNNYKYN 98


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 88  LATTLSKNNIHNSNQRGN 141
           + ++LS N IHN+N + N
Sbjct: 81  IISSLSNNTIHNNNYKYN 98


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 277 ARFQYRQKIKQIRTH 233
           +R QYR+K+KQ+  +
Sbjct: 384 SRRQYREKVKQVEEY 398


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 277 ARFQYRQKIKQIRTH 233
           +R QYR+K+KQ+  +
Sbjct: 352 SRRQYREKVKQVEEY 366


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 88  LATTLSKNNIHNSNQRGNVF 147
           + ++LS N IHN+N    ++
Sbjct: 314 IISSLSNNTIHNNNYNKKLY 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,766
Number of Sequences: 438
Number of extensions: 3333
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)