Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_E20
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   3.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 135 KRNYQQIKEGREAQTWAQEWK 73
           K+   +I EG+E++T   +W+
Sbjct: 213 KKKEDEIDEGKESKTKLSQWR 233


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 456 R*PASTLSLCQIQ*RNHGTSLVTFRVNGQQSLYSLL 563
           R P S   L +++  N+G S    R  GQQ+ Y LL
Sbjct: 369 RAPNSETKLAEMR-DNYGISAGLNRTAGQQAAYQLL 403


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = -3

Query: 329 TTPCWLRGSDAILNAIKQETNCEVGGNSPCGKFSVSEVECLGACVNA--PMIQVNDDYYE 156
           T P W  G  A L  I  +TN   GG+     +        GAC +A     +++ D  +
Sbjct: 82  TVPRWRNGIPATLTYISLDTN--RGGSPKLTPYPNWAQNKAGACGSAITTAYRIHADSCD 139

Query: 155 DLSVEDTKEI 126
            L V DT  I
Sbjct: 140 RLWVLDTGTI 149


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 12   PGPVGSSVSEVNPPSRLXRESSTPG 86
            P P  +S+  V+   R  R+  TPG
Sbjct: 1754 PPPAATSMKSVSSRRRQQRKQQTPG 1778


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 12   PGPVGSSVSEVNPPSRLXRESSTPG 86
            P P  +S+  V+   R  R+  TPG
Sbjct: 1750 PPPAATSMKSVSSRRRQQRKQQTPG 1774


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 190 AFTQAPKHSTSETENLPQGLLPPTSQFVSCLI 285
           AFTQA    T E ++LP G       F  C++
Sbjct: 186 AFTQASLAMTREEKHLPIGASVLFEIFPFCIV 217


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 668 RSIQTTASRQHDSLFVHRDTPEDNPSIPFEFSQANQK 558
           RSI ++  R   S+F   D  +++PSI    S  NQK
Sbjct: 379 RSIYSSLLRYPRSIFRQTDDHQNSPSI--FISDDNQK 413


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 458 VASLHFVVVPDPVKESW 508
           + +L   ++ DPVKE W
Sbjct: 172 IGNLSHALLKDPVKEFW 188


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 458 VASLHFVVVPDPVKESW 508
           + +L   ++ DPVKE W
Sbjct: 225 IGNLSHALLKDPVKEFW 241


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 296 ILNAIKQETNCEVGG 252
           +LN   +  NCE+GG
Sbjct: 869 VLNGETRTINCEIGG 883


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,362
Number of Sequences: 438
Number of extensions: 4614
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)