Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_E19
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.9  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   6.9  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   6.9  

>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 444 NKPNYLFFEKYKTNHYLPLINITLVNTHKIISHHSYWYVILYLNINLSI 590
           N P YL    Y     + +     +   K ISH SY ++  YL +  SI
Sbjct: 95  NHPEYLLLGGYSYGARISMHKSITLAIDKRISHVSYLFLAPYLGLGSSI 143


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 156 SCYFVSKKLFRCINLKLXLSTRVNMRQY 73
           SC F  ++ FR   LKL L  R+N   Y
Sbjct: 581 SCDFKIRRTFRIPVLKLLLQLRINTNDY 608


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 560 NSVPKYQSIDRLLKDPFIAVSAPFDFARFFIS 655
           N  PK + I  LL   FIA   P D A+F IS
Sbjct: 711 NYKPK-EGIKILLSSHFIASKTPTDIAKFLIS 741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,348
Number of Sequences: 5004
Number of extensions: 58725
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)