Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_E19
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0242 - 23559862-23560396,23560420-23560580                       31   1.3  
09_02_0307 + 7131031-7131326,7131414-7131560,7132579-7132711,713...    28   9.5  

>05_05_0242 - 23559862-23560396,23560420-23560580
          Length = 231

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
 Frame = +3

Query: 237 SVTHYLCDV*RCSSASEKLVDCLFLKVDLQYSSPSTVFIYDYRI*SMHTYV*LFIYKCDL 416
           S+ H  C V   +++SE + D L L         +T+FIY Y+I  + T + L++Y  + 
Sbjct: 29  SIVHIACLV--AATSSESITDLLSLH--------ATLFIYTYKIICIMTCICLWVYAKEG 78

Query: 417 QFRGI*CATNKPN---YLFFEKYKT--NHYLP---LINITLVNTHK 530
              G      +PN   ++  E+Y T  NH +    +I +TLV TH+
Sbjct: 79  DV-GRHVPLERPNNMKWMENERYLTVVNHLVSAGFIIGVTLVFTHQ 123


>09_02_0307 +
           7131031-7131326,7131414-7131560,7132579-7132711,
           7133115-7133207,7133421-7133717
          Length = 321

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 696 LXLFXPISFVDPSYWELLLPTLRGDT 773
           L LF  + FV+P +W++    L+GDT
Sbjct: 170 LDLFGVVHFVEPVWWKVGYAKLQGDT 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,664,440
Number of Sequences: 37544
Number of extensions: 297004
Number of successful extensions: 602
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)