Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_E19
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40797-1|AAB37554.2|  250|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF101310-4|AAC69214.2|  662|Caenorhabditis elegans Hypothetical ...    28   6.4  
AF003385-4|AAB54244.1|  333|Caenorhabditis elegans Hypothetical ...    28   6.4  

>U40797-1|AAB37554.2|  250|Caenorhabditis elegans Hypothetical
           protein C28C12.11 protein.
          Length = 250

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
 Frame = +3

Query: 450 PNYLFFEKYKTNHYL--PLINITLVNTHKIISHHSYW---YVIL 566
           PN+ F E  KTN +L  P   +T+ +  K  SH+S+W   Y+IL
Sbjct: 55  PNFSFTENLKTNDHLIDPSHQVTICHRLK-WSHYSFWDSMYLIL 97


>AF101310-4|AAC69214.2|  662|Caenorhabditis elegans Hypothetical
           protein C39F7.5 protein.
          Length = 662

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/62 (32%), Positives = 34/62 (54%)
 Frame = -2

Query: 192 ILYNFTQIFLYSSCYFVSKKLFRCINLKLXLSTRVNMRQYDILTKKRSLDFNKNTIHNFI 13
           IL+ FT I   ++  FVS+   RC NLK+  +   N   +D L +++ L F ++ +  F+
Sbjct: 115 ILFKFTSI--RANRAFVSQ---RCTNLKISANYDENPENFD-LCEQKFLKFEQDAVEIFL 168

Query: 12  TS 7
            S
Sbjct: 169 KS 170


>AF003385-4|AAB54244.1|  333|Caenorhabditis elegans Hypothetical
           protein R08F11.2 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/108 (19%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
 Frame = +3

Query: 450 PNYLFFEKYKTNHYLPLINITLVNTHKIISHHSYWYVILYLNINLSIDF*KIHSLRCRLL 629
           P  +F  KY T  + P+I +   + +  I H    ++++ L   L + F  +   + + +
Sbjct: 171 PPIVFSSKYHTWFFDPMIFVNRTDEYANIPHGVNNFLVVGLTCLLYVSFCFVLGRKLKQV 230

Query: 630 STSLAS-SYQLSTD-YHSNTCLCSL-----XLFXPISFVDPSYWELLL 752
           S   +S S ++ST  +  +  +C++      ++  ++F+D  +W +++
Sbjct: 231 SNGGSSKSNKMSTQIFIQSAMICAINQIASIIYVIMNFIDVPFWLIIV 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,903,336
Number of Sequences: 27780
Number of extensions: 318211
Number of successful extensions: 731
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)