Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_E18
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0781 + 23105554-23106855,23107191-23107511,23107581-231076...    29   5.1  

>12_02_0781 +
           23105554-23106855,23107191-23107511,23107581-23107667,
           23107907-23108302,23108327-23108500,23108600-23108764,
           23108857-23109151,23109319-23109446,23109681-23109986,
           23110531-23110591,23110676-23110915,23111251-23111372
          Length = 1198

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 480 HLTNFIHSFKLIIKLNSLTITHAAHYVQISATEQHSQSSVF*YLIIIQF 626
           H   F+H+F  ++ ++   I HAA Y ++  + +  Q+ V  +  I+ F
Sbjct: 558 HQVEFLHAFDSVLLMSQGQIMHAASYQELLLSSREFQNLVNAHKDIVNF 606


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,702,309
Number of Sequences: 37544
Number of extensions: 323135
Number of successful extensions: 603
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)