Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_E15
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0140 + 17160406-17160517,17160605-17160718,17160800-171609...    28   6.8  
03_02_0146 + 5916692-5917931,5918198-5918261,5918836-5919057,591...    27   8.9  

>06_03_0140 +
           17160406-17160517,17160605-17160718,17160800-17160945,
           17161009-17161222,17161725-17161962,17162089-17162239,
           17162534-17162863
          Length = 434

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 210 YSCKRKYKCIH-GILVLKNEVTKEALFLNVLAGD*SDHLNI 91
           Y+ +  ++C H G+L ++ +        NVL    SDH+N+
Sbjct: 347 YAAEEAWRCYHVGLLCVQEDADARPTMSNVLLALISDHMNL 387


>03_02_0146 +
           5916692-5917931,5918198-5918261,5918836-5919057,
           5919626-5919747,5920105-5920170,5920192-5920386,
           5920480-5921057,5921818-5921968,5922465-5922715
          Length = 962

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 369 TKQQQRYLDFFFKYRIFRILHISFN 443
           T++ QR  D F+ + +FR LH S+N
Sbjct: 545 TQEYQRKCDKFYFWGVFRALHRSYN 569


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,299,378
Number of Sequences: 37544
Number of extensions: 183683
Number of successful extensions: 245
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)