Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_E13
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312...    30   1.4  
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600...    28   5.6  

>03_05_0816 + 27928812-27930059,27931007-27931111,27931197-27931262,
            27931337-27931501,27931671-27931745,27931829-27931983,
            27932234-27932369,27932454-27932523,27932602-27932729,
            27932838-27932894,27933326-27933511,27934031-27934123,
            27934488-27934573,27934668-27934734,27934873-27934939,
            27935016-27935152,27935618-27935709,27935849-27935915,
            27936058-27936078
          Length = 1006

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 169  SRYY*ITLHDRPCQLLNALVIDNVVPGVDRV-W*HRSTVGISR-IPGWRLVLPL 14
            SR Y +  H     L NA+  DN V  + ++   HR  +  S+ +P W   LP+
Sbjct: 905  SRLYNVIKHPNALDLDNAMAYDNAVSALGKICQFHRDGIDASQVVPAWLSCLPI 958


>10_08_0141 +
           15159160-15159306,15159708-15159815,15159958-15160006,
           15160067-15160182,15160358-15160399,15161026-15161442,
           15162356-15162509,15162911-15162975,15163793-15163870,
           15163951-15164061,15164227-15164271,15164677-15164850,
           15165383-15166335,15166471-15166681,15167037-15167196,
           15168786-15169174
          Length = 1072

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/61 (29%), Positives = 22/61 (36%)
 Frame = -1

Query: 196 AKIACFFFNSRYY*ITLHDRPCQLLNALVIDNVVPGVDRVW*HRSTVGISRIPGWRLVLP 17
           AK  CFF  S       HD P   +N    D  V      W  + +  +   P  RL  P
Sbjct: 816 AKYQCFFVRSDIIFKKAHDEPTSQVNTAADDAFVGRWQNTWKIQPSASMHLCPKERLQAP 875

Query: 16  L 14
           L
Sbjct: 876 L 876


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,709,337
Number of Sequences: 37544
Number of extensions: 146327
Number of successful extensions: 349
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)