Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_E11
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    27   0.73 
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    27   0.96 
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   3.9  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   9.0  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    24   9.0  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   9.0  

>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.5 bits (58), Expect = 0.73
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 263 WYKQCGSIYRLRLW*LFGYCFRC 195
           +Y +C   Y ++LW  F  CF C
Sbjct: 135 FYDECKRRYNIKLWKTFTDCFNC 157


>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 27.1 bits (57), Expect = 0.96
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 263 WYKQCGSIYRLRLW*LFGYCFRC 195
           +Y +C   Y ++LW  F  CF C
Sbjct: 132 FYDECKRRYSIKLWKTFTDCFNC 154


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 338 SGFTKFVLNYFQNVFPIVFPVIHNSWYKQCGSIYRL 231
           S F K + +   +   +   + HNS +  C +IYRL
Sbjct: 840 SFFYKILRSSLASFAQVFIDITHNSKFNSCCNIYRL 875


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 139 PFAVRNYPNRLKFLQRLYRHLK 204
           PF + N P+ +  L R ++H++
Sbjct: 332 PFIIFNEPDEVGLLHRFFKHIR 353


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 246  STLLIPRIVNNRKHNWKYIL 305
            +T+L+ RI+ NR H W  ++
Sbjct: 2024 TTVLLERIICNRPHPWGLLI 2043


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 167 LFG*LRTAKGEKRVYIGSSKLAILFQHTQ 81
           L G +    G K VY+GS  L I+FQ  Q
Sbjct: 144 LLGPMSDIFGRKWVYVGSLILYIIFQIPQ 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,675,255
Number of Sequences: 5004
Number of extensions: 32737
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)