Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_E08
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.18 |||mitochondrial distribution and morphology protein ...    69   7e-13
SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual     33   0.033
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    28   0.93 
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    26   5.0  
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    25   8.7  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         25   8.7  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   8.7  

>SPBC119.18 |||mitochondrial distribution and morphology protein
           Mdm35 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 69

 Score = 68.5 bits (160), Expect = 7e-13
 Identities = 27/57 (47%), Positives = 38/57 (66%)
 Frame = -3

Query: 410 NSIGEECTDLKKKYDDCFNTWFSERFLKGDQDDSVCAGIFKIYQECVKNAMKQQSID 240
           +S+ EECT  KKKYD CFN W++ +FLKGD  +  C  +F  Y+ C+  A+K + ID
Sbjct: 3   SSVSEECTPAKKKYDACFNDWYANKFLKGDLHNRDCDELFAEYKSCLLKALKTKKID 59


>SPBC685.05 |gpi15||pig-H |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 33.1 bits (72), Expect = 0.033
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +1

Query: 463 LKLKRYPQLISFTIDVSFRFGSGHQNQIMCTISDQTGTLEVSIGR 597
           L +KRYP  I FT+  S  +G+  Q   +C IS   G   ++IGR
Sbjct: 2   LTIKRYPGAIEFTVHTSKSYGT--QMFALCFISFVIGATSLAIGR 44


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 558 NCTHYLILVSTTKSERNIDCK 496
           NCTHYL++   +K  + IDCK
Sbjct: 376 NCTHYLLVDLFSKYGKVIDCK 396


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 178 QIVADNPNWSVSLNPQPVAISLASFL 101
           Q+V   P WS SL+P  +   +AS L
Sbjct: 103 QVVLSAPVWSASLHPHKINTFVASLL 128


>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 94  GILRNLPRILQQAVGLKTQTNLGCQLLFAFGG 189
           GI+     +  +AV   TQT+LG  L+   GG
Sbjct: 182 GIVSRSGTLTYEAVNQTTQTDLGQSLVIGIGG 213


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 344 SERFLKGDQDDSVCAGIFKIYQECVKN 264
           S  F+     D+V  G+ +IYQ+CV+N
Sbjct: 142 SYSFITIKSKDTVELGLEEIYQQCVQN 168


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 224 KDILGTENEYKTPPNANSS*QPKLVCVFKP 135
           KD+LG + E   PP       PKL  + +P
Sbjct: 237 KDLLGIQKEKPPPPPVAVVIDPKLARILRP 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,740
Number of Sequences: 5004
Number of extensions: 56622
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)