Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_E07
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    94   1e-20
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    26   5.5  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 68/212 (32%), Positives = 89/212 (41%)
 Frame = -1

Query: 649 LVN*I*GGFAVDNATLTRFYTXXXXXXXXXXXXXXXXXXXXHQTGSNNPLGLNRNLDKIP 470
           LV+ + GGF+V N TL RF++                    H  GS+NPLG+  N+D+IP
Sbjct: 161 LVHLLWGGFSVSNPTLNRFFSLHYLMPFVIAALSVMHLIALHTNGSSNPLGVTANMDRIP 220

Query: 469 FHPFFTFKDXXXXXXXXXXXXXXXXINPYLLGDPDNFTPANPLVTPVHIQPE*YFLFAYA 290
            +P++  KD                 NPY   +PD   PA+PL TP+ I PE Y L  YA
Sbjct: 221 MNPYYLIKDLITIFIFLIGINYMAFYNPYGFMEPDCALPADPLKTPMSIVPEWYLLPFYA 280

Query: 289 ILRSIPNKLGGVXXXXXXXXXXXXLPFTFKKKIQGIQFYPINQXXXXXXXXXXXXXXXIG 110
           ILR+IPN   GV            LP      I+G  F P  +               IG
Sbjct: 281 ILRAIPNFQLGVIAMLLSILVLLLLPLLDFSAIRGNSFNPFGKFFFWTFVADFVILAWIG 340

Query: 109 ARPVENPEXITGQXLTMRDF*DFF*IQLSEYT 14
               EN     G   T+  F  +F I +  YT
Sbjct: 341 GSHPENVFITIGAIATIFYF-SYFFILIPVYT 371


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 152 LNILSNYNFINMNRSPTCRKSRDXYRTXINN 60
           LN+ S    I    SP    SRD YR+ + N
Sbjct: 796 LNLSSQITVIISEESPEAGNSRDIYRSTLEN 826


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,521
Number of Sequences: 5004
Number of extensions: 25475
Number of successful extensions: 39
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)