Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_E07
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    25   0.84 
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    25   0.84 
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    25   0.84 
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    25   0.84 
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    25   0.84 
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    25   0.84 
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    25   0.84 
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    25   0.84 
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    25   0.84 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   3.4  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   4.5  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   4.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   4.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.9  

>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 257 SNCLNYINYNFNYLTIY 207
           SN  NY NYN NY  +Y
Sbjct: 86  SNNYNYNNYNNNYKPLY 102


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 257 SNCLNYINYNFNYLTIY 207
           SN  NY NYN NY  +Y
Sbjct: 86  SNNYNYNNYNNNYKPLY 102


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 257 SNCLNYINYNFNYLTIY 207
           SN  NY NYN NY  +Y
Sbjct: 86  SNNYNYNNYNNNYKPLY 102


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 257 SNCLNYINYNFNYLTIY 207
           SN  NY NYN NY  +Y
Sbjct: 86  SNNYNYNNYNNNYKPLY 102


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 257 SNCLNYINYNFNYLTIY 207
           SN  NY NYN NY  +Y
Sbjct: 319 SNNYNYNNYNNNYKPLY 335


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 257 SNCLNYINYNFNYLTIY 207
           SN  NY NYN NY  +Y
Sbjct: 319 SNNYNYNNYNNNYKPLY 335


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 257 SNCLNYINYNFNYLTIY 207
           SN  NY NYN NY  +Y
Sbjct: 319 SNNYNYNNYNNNYKPLY 335


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 257 SNCLNYINYNFNYLTIY 207
           SN  NY NYN NY  +Y
Sbjct: 319 SNNYNYNNYNNNYKPLY 335


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 257 SNCLNYINYNFNYLTIY 207
           SN  NY NYN NY  +Y
Sbjct: 308 SNNYNYNNYNNNYKPLY 324


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 257 SNCLNYINYNFNYLTIY 207
           SN  NY NYN NY  ++
Sbjct: 319 SNNYNYNNYNNNYKPLH 335


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 257 SNCLNYINYNFNY 219
           SN  NY NYN NY
Sbjct: 306 SNNYNYKNYNNNY 318


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 257 SNCLNYINYNFNY 219
           SN  NY NYN NY
Sbjct: 317 SNNYNYKNYNNNY 329


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 314 MIFFICLCNSSINP 273
           ++F++  CNS+INP
Sbjct: 46  VLFWLGYCNSAINP 59


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 314 MIFFICLCNSSINP 273
           ++F++  CNS+INP
Sbjct: 494 VLFWLGYCNSAINP 507


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 477 LSKFLFNPKGLLDPVW 524
           L +  F+ +GLL PVW
Sbjct: 213 LEELGFDTEGLLPPVW 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,834
Number of Sequences: 438
Number of extensions: 1762
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)