Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_E05
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr 2|...    31   0.14 
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    29   1.0  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   7.2  

>SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +1

Query: 469 IHFQRIKYIFDAFYRTQYLHNSIYEKIRLKIKIADINVLLEF 594
           +H QR +YI+D +Y+ + +   +Y  + LK   AD N++ ++
Sbjct: 52  LHHQRSRYIYDLYYKREAISTELYNWL-LKQNYADGNLIAKW 92


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 432 YVNKVFFFV*RIHCIFIKVVILLFAYLAVRYYRFE 328
           + NK+FF +  I C+F    ++LF Y   R  RF+
Sbjct: 467 FPNKLFFILSFIFCLFFLFSLVLFGYDPKRRQRFK 501


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 403 LYKKKYLIN-ISYTVQISFTNEFIHFQRIKYIFDAFYRTQYLHNSIYEKIRLKIK 564
           LY +    N + YT  + F  +   +Q   Y+FD  YRT   H S +   RL I+
Sbjct: 239 LYPRSDRANEVLYTQYLGFLTKRGDYQIAIYMFDEMYRTH--HWSSFTACRLMIE 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,482
Number of Sequences: 5004
Number of extensions: 51553
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)