Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_E05
         (805 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29094-1|CAA82338.1|  147|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AF303257-1|AAG50215.1|  147|Caenorhabditis elegans G10 protein h...    31   1.3  
U88165-4|AAR30207.1|  700|Caenorhabditis elegans Maternal effect...    29   3.9  
U88165-3|AAK21393.1|  754|Caenorhabditis elegans Maternal effect...    29   3.9  
U34812-1|AAB01719.1|  754|Caenorhabditis elegans MES-3 protein.        29   3.9  

>Z29094-1|CAA82338.1|  147|Caenorhabditis elegans Hypothetical
           protein C07A9.2 protein.
          Length = 147

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 469 IHFQRIKYIFDAFYRTQYLHNSIYEKIRLKIKIADINVLLEF 594
           IH QR +Y++D +Y+   +   +YE   L  K AD  ++ ++
Sbjct: 55  IHHQRSRYVYDMYYKKAEISRELYE-FCLTAKFADAALIAKW 95


>AF303257-1|AAG50215.1|  147|Caenorhabditis elegans G10 protein
           homolog protein.
          Length = 147

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 469 IHFQRIKYIFDAFYRTQYLHNSIYEKIRLKIKIADINVLLEF 594
           IH QR +Y++D +Y+   +   +YE   L  K AD  ++ ++
Sbjct: 55  IHHQRSRYVYDMYYKKAEISRELYE-FCLTAKFADAALIAKW 95


>U88165-4|AAR30207.1|  700|Caenorhabditis elegans Maternal effect
           sterile protein3, isoform b protein.
          Length = 700

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 3   YFLHIIQQTATTPYIRYLHITRKN*LV 83
           Y L  IQ +   PYIRY+++ R N LV
Sbjct: 520 YGLDFIQSSGHMPYIRYVYMNRANDLV 546


>U88165-3|AAK21393.1|  754|Caenorhabditis elegans Maternal effect
           sterile protein3, isoform a protein.
          Length = 754

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 3   YFLHIIQQTATTPYIRYLHITRKN*LV 83
           Y L  IQ +   PYIRY+++ R N LV
Sbjct: 520 YGLDFIQSSGHMPYIRYVYMNRANDLV 546


>U34812-1|AAB01719.1|  754|Caenorhabditis elegans MES-3 protein.
          Length = 754

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 3   YFLHIIQQTATTPYIRYLHITRKN*LV 83
           Y L  IQ +   PYIRY+++ R N LV
Sbjct: 520 YGLDFIQSSGHMPYIRYVYMNRANDLV 546


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,246,064
Number of Sequences: 27780
Number of extensions: 276909
Number of successful extensions: 464
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)