Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_E05
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    25   0.62 
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    25   0.82 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   1.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.5  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 370 NYNFYKYTVYSLYKKKYLINISYTVQI 450
           NYN Y    Y+ Y KK   NI+Y  QI
Sbjct: 93  NYNNYNNN-YNNYNKKLYYNINYIEQI 118


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 361 K*KNYNFYKYTVYSLYKKKYLINI 432
           K  NYN Y      LY K Y+INI
Sbjct: 90  KYSNYNNYNNYNKKLYYKNYIINI 113


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
 Frame = +1

Query: 334 SIIANSKICK*KNYNFYKYTVYS-----LYKKKYLINI 432
           S+  N K     NYN Y    Y+     LY K Y+INI
Sbjct: 317 SLSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYIINI 354


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +1

Query: 370 NYNFYKYTVYSLYKKKY--LINI 432
           NYN Y    Y+ YKK Y  +INI
Sbjct: 337 NYNNYNNNNYNNYKKLYYNIINI 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,725
Number of Sequences: 438
Number of extensions: 3556
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)