Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_E04
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0155 + 20373083-20373385,20374185-20374224,20374289-20374407     29   5.0  

>02_04_0155 + 20373083-20373385,20374185-20374224,20374289-20374407
          Length = 153

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 72  DKSHRQPTYN*LKYNIHMNFLRLFLW*CHKSMLEFT*KASLKIKMTLMW 218
           D    + T+N   YNI M  L L +   H  ++E      +K+KM L+W
Sbjct: 75  DCEDEEVTFN--VYNIDMEILELII--THSDLVELKALPLIKVKMVLLW 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,083,061
Number of Sequences: 37544
Number of extensions: 293806
Number of successful extensions: 455
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)