Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_E03
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   201   5e-53
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   201   5e-53
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    47   2e-06
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    30   0.27 
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   3.4  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.5  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   4.5  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   4.5  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   5.9  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   7.8  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  201 bits (491), Expect = 5e-53
 Identities = 89/114 (78%), Positives = 105/114 (92%)
 Frame = -1

Query: 470 LGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVM 291
           LGLPV A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++ATVKKGKP+LRKK+M
Sbjct: 17  LGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIM 76

Query: 290 PAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 129
           PA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 77  PAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130



 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 513 RGRGGSAGAKFRISPGSP 460
           RGRG ++G K+R++ G P
Sbjct: 3   RGRGAASGTKYRMTLGLP 20


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  201 bits (491), Expect = 5e-53
 Identities = 89/114 (78%), Positives = 105/114 (92%)
 Frame = -1

Query: 470 LGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVM 291
           LGLPV A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++ATVKKGKP+LRKK+M
Sbjct: 17  LGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIM 76

Query: 290 PAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 129
           PA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 77  PAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130



 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 513 RGRGGSAGAKFRISPGSP 460
           RGRG ++G K+R++ G P
Sbjct: 3   RGRGAASGTKYRMTLGLP 20


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
 Frame = -1

Query: 359 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 207
           A  GD +V  VKK +            R  +  A+++R + P RR DG ++ F+DNA V+
Sbjct: 31  ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90

Query: 206 VNNKGEMKGSAITGPVAKE 150
           VN + E  G+ I   VA E
Sbjct: 91  VNKECEPLGTRILSVVANE 109


>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 886

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 23/87 (26%), Positives = 37/87 (42%)
 Frame = +1

Query: 208  MTPALSSKYINTPSRLLNGFRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPL 387
            +  ALSS+Y    S L        +T  +T   SS     T +++ +P P    + R P 
Sbjct: 777  LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836

Query: 388  IPWTAITYRFFAPVLSAQLITAPTGRP 468
             P +A      A  +++ LI +P   P
Sbjct: 837  TPLSA-ALGSAAQSITSPLIMSPAAIP 862


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -1

Query: 326 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 216
           KKG P  RK   P+++        PF  RD +FI  E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 178 EPFISPLLLTMTPALSSKYINTPS 249
           +P+  P+L +  P L   Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +1

Query: 136  HRSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTA 288
            + + H    GP++   ++  L     P  +S Y+N  +  L+GF+ ++  A
Sbjct: 963  YNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 130 RGHRSAHSLATGPVMAEPFISPLLL-TMTPALSSKYINTPSRLLNGF 267
           R H+ AH+       AEP ++P++   + P+++    +TPS L   F
Sbjct: 60  RRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESF 106


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -1

Query: 341 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 210
           IV    KGK  L   + P++ I       R  G  +Y ED  GV
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 219 IVLKVYKYSITPSERFPLPDDHCRHYLFPEFR 314
           +V +++++     E FPLP       LFP  R
Sbjct: 438 LVSEIFRHPTHTDEDFPLPSPSLSSLLFPTLR 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,674
Number of Sequences: 5004
Number of extensions: 51181
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)