Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_E03
(569 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal prot... 212 1e-55
Z75541-6|CAA99857.2| 644|Caenorhabditis elegans Hypothetical pr... 31 0.77
AF440800-1|AAL28139.1| 644|Caenorhabditis elegans transcription... 31 0.77
Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z70307-11|CAA94337.1| 488|Caenorhabditis elegans Hypothetical p... 29 2.4
U40411-2|AAR25660.2| 413|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z75541-7|CAI79201.1| 197|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 28 4.1
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 28 4.1
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 28 4.1
AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical... 28 4.1
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 28 4.1
Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical pr... 28 5.4
U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z72511-1|CAA96655.1| 186|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 9.5
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 9.5
>U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 23 protein.
Length = 140
Score = 212 bits (518), Expect = 1e-55
Identities = 98/114 (85%), Positives = 106/114 (92%)
Frame = -1
Query: 470 LGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVM 291
LGLPVGAV+NCADNTGAKNL+VI+V GI+GRLNRLP+AG GDM V +VKKGKPELRKKV+
Sbjct: 18 LGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVL 77
Query: 290 PAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 129
VVIRQRK FRR+DG FIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 78 QGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 40.7 bits (91), Expect = 7e-04
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = -3
Query: 522 MSKRGRGGSAGAKFRISPGSPSGS 451
MSKRGRGG++GAKFRIS G P G+
Sbjct: 1 MSKRGRGGASGAKFRISLGLPVGA 24
>Z75541-6|CAA99857.2| 644|Caenorhabditis elegans Hypothetical
protein F52B5.5a protein.
Length = 644
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 103 LEYTFKISNCVSLSFPSTSKSNPKNYNLRNRHL 5
LE F ++N + PSTS S+P N N R R L
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFL 477
>AF440800-1|AAL28139.1| 644|Caenorhabditis elegans transcription
factor CEP-1 protein.
Length = 644
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 103 LEYTFKISNCVSLSFPSTSKSNPKNYNLRNRHL 5
LE F ++N + PSTS S+P N N R R L
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFL 477
>Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical
protein C44C10.1 protein.
Length = 300
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -3
Query: 510 GRGGSAGAKFRISPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 376
G G+AGA PG P G+ N G CD CP + +P
Sbjct: 259 GDNGAAGA-----PGQPGGNGNNGADGETGAPGGCDHCPPPRTAP 298
>Z70307-11|CAA94337.1| 488|Caenorhabditis elegans Hypothetical
protein C39E9.10 protein.
Length = 488
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = +3
Query: 474 RYGISLPRN--HHVLS*TFCCIKILKASAG 557
R+G + P++ H ++S T+CC+ +L SAG
Sbjct: 408 RHGSTYPKDQYHSLVSATYCCVALLLLSAG 437
>U40411-2|AAR25660.2| 413|Caenorhabditis elegans Hypothetical
protein B0403.5 protein.
Length = 413
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 394 WTAITYRFFAPVLSAQLITAPTGRPRGDTEFRSRGTTTSSLRHF 525
++ T FF PVL+ + +T T R ++ TTT++LR++
Sbjct: 353 YSTSTTPFFRPVLTTRPVTTTTWRTTRRITTTTKPTTTTTLRNY 396
>Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical
protein F47G4.8 protein.
Length = 188
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 72 TQLLILNVYSSYRARV*GNTRPQISTFFGYRPCDGRALHFALVI 203
T LL ++ S RAR+ P + F YRPC R L + ++
Sbjct: 80 TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123
>Z75541-7|CAI79201.1| 197|Caenorhabditis elegans Hypothetical
protein F52B5.5b protein.
Length = 197
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 91 FKISNCVSLSFPSTSKSNPKNYNLRNRHL 5
F ++N + PSTS S+P N N R R L
Sbjct: 2 FNVTNTTAQMEPSTSYSSPSNSNNRKRFL 30
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.2 protein.
Length = 316
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 510 GRGGSAGAKFRISPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 376
G G AGA +PG+P + + G E CD CP + +P
Sbjct: 272 GPQGDAGAPG--APGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.1 protein.
Length = 316
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 510 GRGGSAGAKFRISPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 376
G G AGA +PG+P + + G E CD CP + +P
Sbjct: 272 GPQGDAGAPG--APGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 510 GRGGSAGAKFRISPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 376
G G AGA +PG+P + + G E CD CP + +P
Sbjct: 272 GPQGDAGAPG--APGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 510 GRGGSAGAKFRISPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 376
G G AGA +PG+P + + G E CD CP + +P
Sbjct: 272 GPQGDAGAPG--APGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical
protein Y66D12A.5 protein.
Length = 729
Score = 28.3 bits (60), Expect = 4.1
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = -1
Query: 470 LGLPVGAVINC-ADNTGAKNLYVIAVQG---IKGRLNRLPAAGSGDMIVATVKKGKPELR 303
L L G V C +D KN + + G + G+LNR M+ +T K +L
Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512
Query: 302 KKVM-PAVVIRQRKPFRRRDGVFIYFEDN 219
V P +RK +RD F Y+ED+
Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -3
Query: 510 GRGGSAGAKFRISPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 376
G G AGA + PG+P G E CD CP + +P
Sbjct: 307 GPQGDAGAPGQ--PGAPGQQGEPGEDGESGSEGACDHCPPPRTAP 349
>Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical
protein T23D5.9 protein.
Length = 354
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 204 DYDTRIVLKVYKYSITPSERFPL 272
DY + V K+Y YSIT RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184
>U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical
protein W03B1.2 protein.
Length = 814
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 361 AGSLFRRPLIPWTAITYRFFAPVLSAQLITA 453
A LFR ++P+ TY F +L L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592
>Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical
protein F57B1.4 protein.
Length = 317
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -3
Query: 510 GRGGSAGAKFRISPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 376
G G AGA +PG P + + G E CD CP + +P
Sbjct: 273 GPQGDAGAPG--APGQPGQAGAPGQDGDSGSEGACDHCPPPRTAP 315
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical
protein F57B1.3 protein.
Length = 313
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -3
Query: 510 GRGGSAGAKFRISPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 376
G G AGA +PG P + + G E CD CP + +P
Sbjct: 269 GPQGDAGAPG--APGQPGQAGAPGQDGDSGSEGACDHCPPPRTAP 311
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -3
Query: 516 KRGRGGSAGAKFRISPGSPSG--SSNQLR 436
K GRGGS G + + +PG PSG S+ QL+
Sbjct: 264 KPGRGGSTGTRRQTNPG-PSGFFSATQLQ 291
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -3
Query: 516 KRGRGGSAGAKFRISPGSPSG--SSNQLR 436
K GRGGS G + + +PG PSG S+ QL+
Sbjct: 264 KPGRGGSTGTRRQTNPG-PSGFFSATQLQ 291
>Z72511-1|CAA96655.1| 186|Caenorhabditis elegans Hypothetical
protein F55A11.1 protein.
Length = 186
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = -3
Query: 507 RGGSAGAKFRISPGSPSGSSNQLRRQHRGKESVCDRC-PRYQRSPEQTAGGRFRGHDCGH 331
+GG A PG Q R +H KE + + P +PEQ F HD
Sbjct: 33 QGGQAEQAQHAQPGQQQFGGEQARDEHHIKEHLDGKVDPTANMTPEQLQFHYFNMHDLDK 92
Query: 330 SQK 322
+ K
Sbjct: 93 NGK 95
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 461 GDPGEIRNFAPAEPPRPL 514
GDPG+I PA PP P+
Sbjct: 226 GDPGDIGAMGPAGPPGPI 243
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 461 GDPGEIRNFAPAEPPRPL 514
GDPG+I PA PP P+
Sbjct: 226 GDPGDIGAMGPAGPPGPI 243
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,701,010
Number of Sequences: 27780
Number of extensions: 304886
Number of successful extensions: 865
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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