Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_E01
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0398 + 3142934-3143110,3143697-3143930,3144180-3144353,314...    31   1.4  
03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689...    29   4.2  
12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003...    28   7.3  
02_02_0230 - 8087849-8087893,8087977-8088168                           28   7.3  
08_01_0340 - 3008124-3009176                                           28   9.7  
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426...    28   9.7  

>05_01_0398 +
           3142934-3143110,3143697-3143930,3144180-3144353,
           3144450-3144554,3145274-3145351,3146019-3146100,
           3146519-3146681,3147100-3147435,3147511-3147641,
           3147687-3147729,3147826-3148444,3148523-3148588,
           3149103-3149265,3149557-3149635,3150232-3150431,
           3150972-3151144,3151466-3151559,3152353-3152444,
           3153146-3153436
          Length = 1099

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
 Frame = -3

Query: 348 VEVHSTADTAENTDPLKPLTGENFMDWFTRNKSLLEERNP-ELTPSELSRHCVKIFKNVQ 172
           +E    A+  +   P++  T     + FT N S+  +RNP  + PS  +R      K   
Sbjct: 544 IETEEIANQIQEKRPVE--TSRKAAENFTSNSSMEPDRNPVSMIPSYSNRG-----KEEN 596

Query: 171 SIAHADSNKRKHEDAKRGHYNERPQTIKTQRLCVPKENIT 52
             +  +  +R   ++ R  YN +PQ++++      +E +T
Sbjct: 597 GSSGLNDRERVDLNSSRISYNSKPQSVQSSANLQEEEKVT 636


>03_06_0358 +
           33366265-33366447,33367371-33367468,33367910-33368945,
           33369042-33369554,33370456-33370644,33370715-33370848,
           33371196-33371358
          Length = 771

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 161 TLTRINGNTKTQNGDTTTSAPKQS 90
           T++RI+GN +T NGD   ++P  S
Sbjct: 733 TISRISGNPRTANGDREVNSPTAS 756


>12_02_0362 +
           17998110-17998345,17998877-17998958,18000309-18000392,
           18000600-18000734,18001395-18001570,18001654-18001805,
           18003730-18004575,18004961-18005301
          Length = 683

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -3

Query: 273 DWFTRNKSLLEERNPELTPSELSRHCVKIFKNVQSIAHADSNKRKHEDAKRGHYNERPQ 97
           D  T N  L ++  PE T  +     +K  +N     H DS+   HE  +R +   RP+
Sbjct: 513 DQVTGNGHLGKQNTPE-TAQDAPMDDIKEQRNSHGSKHHDSHDTAHERGERDYKRPRPE 570


>02_02_0230 - 8087849-8087893,8087977-8088168
          Length = 78

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
 Frame = -2

Query: 763 PKRNRAKSLRINGTXERRSSXTXS-------CQVRIALRAHALGRE 647
           P+R RA SL    +   RS    S       CQ+R AL AHALG E
Sbjct: 5   PRRLRALSLATPDSSAWRSGAARSGLLEVGACQIRPALTAHALGLE 50


>08_01_0340 - 3008124-3009176
          Length = 350

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 413 NGFRTPPGDAFIVTG 457
           NG+ TPPGD F+V G
Sbjct: 20  NGWATPPGDTFMVRG 34


>01_06_0319 -
           28441082-28441102,28441630-28441701,28442568-28442627,
           28442918-28443105,28444300-28444327,28444880-28444907,
           28444942-28445163,28445238-28445409,28446224-28447468,
           28447573-28447741,28447820-28448045,28449096-28449451,
           28449530-28449724,28450655-28450864,28451729-28452004
          Length = 1155

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 183 KNVQSIAHADSNKRKHEDAKRGH 115
           K+  SI HAD++   HED+K G+
Sbjct: 257 KDASSIDHADNHISSHEDSKAGN 279


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,802,845
Number of Sequences: 37544
Number of extensions: 353671
Number of successful extensions: 902
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)