Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_E01
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    25   1.1  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    25   1.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.2  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   5.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   7.4  

>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 282 NFMDWFTRNKSLLEERNPELTPSELSRHCVKIFKNVQSIAHADSNK 145
           +FMD  T N   LE    ELTP + +    +I +   S A AD ++
Sbjct: 64  HFMDGNTLNVEKLESGTRELTPDDFTEDVHEIIEQCVSKA-ADEDE 108


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 282 NFMDWFTRNKSLLEERNPELTPSELSRHCVKIFKNVQSIAHADSNK 145
           +FMD  T N   LE    ELTP + +    +I +   S A AD ++
Sbjct: 64  HFMDGNTLNVEKLESGTRELTPDDFTEDVHEIIEQCVSKA-ADEDE 108


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 201 HCVKIFKNVQSIAHADSNKRKHEDAKR 121
           HC +I+K ++ I     + ++ ED+ R
Sbjct: 475 HCPEIYKAIEGIRFIADHTKREEDSTR 501


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 636 LAESWEKETDKLNVAQNSHFQ 574
           L +S  K T+KL+   N+HFQ
Sbjct: 672 LKDSRIKTTEKLSTDPNTHFQ 692


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 318 ENTDPLKPLTGENFMDWFTRNKSLLEERNPELT 220
           E   P + +    +++  T+  + +EE+ PELT
Sbjct: 81  ELLSPNRTINSVVYIEQLTKLNNAVEEKRPELT 113


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 306 PLKPLTGENFMDWFTRNKSLLEERNPELT 220
           P + +    +++  T+  + +EE+ PELT
Sbjct: 207 PNRTINSVVYIEQLTKLNNAVEEKRPELT 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,044
Number of Sequences: 438
Number of extensions: 3820
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)