Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_D23
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   238   8e-64
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   227   1e-60
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    29   1.1  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    27   2.5  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   3.2  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   5.7  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   9.9  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.9  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    25   9.9  

>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  238 bits (582), Expect = 8e-64
 Identities = 111/166 (66%), Positives = 137/166 (82%)
 Frame = -3

Query: 807 ETEGSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYR 628
           E++G+  + ++ KEYR K+E+EL  I  D+L +L+KHLIP A++ ESKVFY KMKGDYYR
Sbjct: 73  ESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVFYYKMKGDYYR 132

Query: 627 YLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDK 448
           YLAE A GE R    + S + Y+ A EI+ A++ PTHPIRLGLALNFSVFYYEILNSPD+
Sbjct: 133 YLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVFYYEILNSPDR 192

Query: 447 ACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 310
           AC LAKQAFD+AI+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 193 ACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 238


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  227 bits (555), Expect = 1e-60
 Identities = 106/166 (63%), Positives = 132/166 (79%)
 Frame = -3

Query: 807 ETEGSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYR 628
           E+ G+ R+  + KEYR K+E EL +I +DVL +L+KHLIP A+  ESKVFY KMKGDYYR
Sbjct: 72  ESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKVFYYKMKGDYYR 131

Query: 627 YLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDK 448
           YLAE   GE      + S +AY+ A +I+ A++ PT P+RLGLALNFSVFYYEIL+SP+ 
Sbjct: 132 YLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSVFYYEILDSPES 191

Query: 447 ACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 310
           AC LAKQ FD+AI+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 192 ACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 237


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
 Frame = -3

Query: 810  TETEGSERKQQMAKEYRVKVEKELREIXYDVLGLLDKHLIPKASNPESKVFYLKMKGDYY 631
            T    S +  ++ + YR+    ++ E       ++   L   A++ E       +  +  
Sbjct: 989  TRNLASIKSHELHEAYRLVKANKILEAQICFRSIIYLALTTVANSEEEADEISALIDECC 1048

Query: 630  RYLAEVATG-ETRHSVVEDSQKAYQDAFEISKAKMQPTHP-IRLGLALNFS 484
            RY+  ++   E R    ED+++A + ++  + A +QP H  I L LA+N S
Sbjct: 1049 RYIVALSCELERRRLGEEDTKRALELSYYFASADLQPMHSIIALRLAINAS 1099


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 157 LASASVMIPRQTTFSNVTRFLI-NTDENKCVCWGECGEILVVAA 285
           L + SV+I   +TFS V+R L  +T   + VCW  C   L+ A+
Sbjct: 43  LVNGSVVIWDLSTFS-VSRVLTGHTRAIQSVCWSSCDRFLLTAS 85


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -3

Query: 711  LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 574
            +++K  IP++   E+K  Y +  GD+     +L E A  E  H V+ D+
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = -3

Query: 573 QKAYQDAFEISKAKMQPTHPIRL-GLALNF-SVFYYEILNSPDKACQLAKQAFDDAIAEL 400
           Q+   D  E   +   P H        L F S  Y ++    D   QLA Q F     ++
Sbjct: 415 QRLVADLHEFYNSVKGPAHSFETEDPVLKFVSQSYDDLFPYMDNFIQLAVQLFYHISKKV 474

Query: 399 DTLNEDSYKDSTLIMQLLRDN 337
           + L  +++  S  ++Q ++DN
Sbjct: 475 NCLYVEAFSSSDAVLQRIQDN 495


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 66  YKTVKDDTTFNFRRNGKVRCERLLTFLQATARVGFGDDTAPD 191
           ++T   D   +F + G++R  RL+TF       GFG    PD
Sbjct: 237 FETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 520 CGLHFRLADFKSILVCFL*ILYNRMSGFSCGHFC 621
           C L+F L + K+ L+    I+Y  + GFS  H C
Sbjct: 46  CLLNFSLRENKNYLI----IVYLPIEGFSANHMC 75


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -3

Query: 792 ERKQQMAKEYRVKVEKELREIXYDV--LGLLDKHLIPKASNPE 670
           E++Q  A +YR+KVE+   +I   V  +  L+  L  + SNPE
Sbjct: 85  EQEQNEANDYRLKVERLEHKISDYVQEINSLNSQLQIQKSNPE 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,285
Number of Sequences: 5004
Number of extensions: 63438
Number of successful extensions: 204
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)