Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_D23
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    26   0.49 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    26   0.49 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.85 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   2.0  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    22   8.0  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    22   8.0  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = +2

Query: 518 CVGCIFALLISKASWYAFCESSTTECLVSPVATSARY 628
           C  CI   + S   W  +C S+   C+ +  +   R+
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRF 71


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = +2

Query: 518 CVGCIFALLISKASWYAFCESSTTECLVSPVATSARY 628
           C  CI   + S   W  +C S+   C+ +  +   R+
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRF 519


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 15  YIHQVSSISCNPV*IQKYKTVKDDTTFNFRRNGKVRCE 128
           Y H + +++ N   ++    VKDD T    ++G V  E
Sbjct: 170 YTHYIGTLATNDNILESISYVKDDGTEGIAKSGDVLVE 207


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 129 RLLTFLQATARVGFGDDTAPDDVLEC 206
           RL T LQAT   G   +  P DV EC
Sbjct: 131 RLNTRLQATLNCGLRLEKFPFDVQEC 156


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 771 KEYRVKVEKELREIXYDV 718
           K+YRVK E+E +++  +V
Sbjct: 113 KKYRVKFEEEAKKLGINV 130


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 771 KEYRVKVEKELREIXYDV 718
           K+YRVK E+E +++  +V
Sbjct: 113 KKYRVKFEEEAKKLGINV 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,557
Number of Sequences: 438
Number of extensions: 4292
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)