Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_D19
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    26   4.6  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    26   4.6  
SPAP27G11.07c |||serine/threonine protein kinase |Schizosaccharo...    26   4.6  

>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 452 YENGKNE--I*GTMKRSTLKILKFQSFGPSNLGTVVSREFNNT 330
           +EN  NE  I   ++ S L   KF+   PS+L  VVS+E + T
Sbjct: 82  FENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQT 124


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 468 FDIFYVRKWEE*NMRYYEKIHIKNIEI 388
           FDI  +  WE     Y+  IH KN  I
Sbjct: 140 FDILVIEGWEAFRSSYFASIHRKNNSI 166


>SPAP27G11.07c |||serine/threonine protein kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 238

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 102 KXKCVQYKAIVLKCKYFYMLCPQAYHTAAQTRQIF 206
           + +C+    ++ KC Y  + CP  Y   A   QI+
Sbjct: 66  RKRCLVEARLLAKCHYVGIKCPMLYFIDANRGQIY 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,465
Number of Sequences: 5004
Number of extensions: 53219
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)