Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_D19
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AL023842-7|CAA19518.3|  345|Caenorhabditis elegans Hypothetical ...    27   9.9  
AB108783-1|BAC75705.1|  345|Caenorhabditis elegans SDF-9 protein...    27   9.9  

>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical protein
            F31B12.2 protein.
          Length = 1089

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 188  CSGVVCLWTEHIKIFAFKYYCLVLD 114
            CSG+  ++    K+F FK +CL  D
Sbjct: 960  CSGLARVYNRTTKLFLFKVFCLFYD 984


>AL023842-7|CAA19518.3|  345|Caenorhabditis elegans Hypothetical
           protein Y44A6D.4 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -1

Query: 542 LVIWTELCFFHRSKIFTSLKHILNILTYFMYENGKNE 432
           L+ ++E CF   S +   ++  +N  T+F+ E+ +N+
Sbjct: 299 LIAYSESCFVKWSSMDKEIEKFINTKTWFLNESSRNK 335


>AB108783-1|BAC75705.1|  345|Caenorhabditis elegans SDF-9 protein
           protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -1

Query: 542 LVIWTELCFFHRSKIFTSLKHILNILTYFMYENGKNE 432
           L+ ++E CF   S +   ++  +N  T+F+ E+ +N+
Sbjct: 299 LIAYSESCFVKWSSMDKEIEKFINTKTWFLNESSRNK 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,546,134
Number of Sequences: 27780
Number of extensions: 286672
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)