Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_D16
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81058-6|CAB62801.2|  252|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z77657-5|CAB01145.2|  381|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z70309-8|CAE17922.1|  196|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z81058-6|CAB62801.2|  252|Caenorhabditis elegans Hypothetical
           protein F11E6.6 protein.
          Length = 252

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 253 LSELGHWLSLVCTRQFIITFYI*LQ*SPPHKPHKDISSSQNKIELLPII 399
           L E   W+  +C   FIITF+I L+ S  H P K +    ++ +  PI+
Sbjct: 190 LLEASLWVIAICFHVFIITFFIELRFSYLHSP-KVVFVRSDEADNTPIL 237


>Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK1058.6 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 142 YSTTGTLISNLMVGAGLHKVYRLQLQCKKIQNYMDKTLSELGHWLSLVCT 291
           +ST+   I + +       +YR+ L  K+IQ Y+  T+ +   WLS + T
Sbjct: 150 FSTSVGKIGSAICWENYMPLYRMTLYSKEIQIYLAPTVDDRDVWLSTMRT 199


>Z77657-5|CAB01145.2|  381|Caenorhabditis elegans Hypothetical
           protein F08H9.8 protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 210 PVTVQENSKLYG*NIVRTGPLVKFGLYKAVYNNFLYLITIVTP 338
           P    +  K+YG    R+G +   G     YNN   L TI +P
Sbjct: 151 PAICPDPKKIYGGQYTRSGNITSPGYPVQYYNNLDCLYTITSP 193


>Z70309-8|CAE17922.1|  196|Caenorhabditis elegans Hypothetical
           protein R102.9 protein.
          Length = 196

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = +1

Query: 193 HKVY---RLQLQCKKIQNYMDKTLSELG 267
           H VY     QLQ  +IQN++D  +S LG
Sbjct: 65  HDVYSCREFQLQAHRIQNFLDTAVSSLG 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,498,407
Number of Sequences: 27780
Number of extensions: 343378
Number of successful extensions: 672
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)