Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_D13
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    27   2.1  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    27   2.7  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    26   6.3  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   8.3  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 141 YLLFVVKFHSKRAAQ*ILLTFYIEIQRLSFLLHRLVNELTAHLVL 275
           YLL    F+   + + +  TF + +QR++ ++ RL+++   H  L
Sbjct: 798 YLLAYAAFYDSVSLEFLATTFDLPVQRVTVIVSRLLSKREIHAAL 842


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 581 NRKMTRKHTFVGAYAHSENKRQLSVCFGFLTI 676
           N + +R HT    Y   EN R   +C G L +
Sbjct: 688 NERSSRSHTVFMLYIDGENSRTKQICKGTLNL 719


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +1

Query: 10  TNISNDTRPN----HHLIFHHGSSQPQNVNXXSAL 102
           T++ +D R +     H + HHG++ P+N+   +AL
Sbjct: 206 TDLDDDERSSVEFYEHCLNHHGNTYPENLTIPNAL 240


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 357 IKFRHPNIFLLHSIFTL*LTSRGFGNHLT 271
           +   +PN  L  SI+TL   ++ +GN+LT
Sbjct: 692 VAIAYPNYKLYFSIYTLGKFAKQYGNYLT 720


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,049,445
Number of Sequences: 5004
Number of extensions: 63085
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)