Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_D13
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88184-7|AAK31516.1|  576|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF016665-6|AAL02468.1|  655|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81564-9|CAB04575.1|  724|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U58726-7|AAP13770.1|  562|Caenorhabditis elegans Amp-activated k...    28   7.8  
U58726-6|AAM69095.1|  624|Caenorhabditis elegans Amp-activated k...    28   7.8  
U58726-5|AAM69096.1|  626|Caenorhabditis elegans Amp-activated k...    28   7.8  
AY347273-1|AAR06928.1|  624|Caenorhabditis elegans AMP-activated...    28   7.8  

>U88184-7|AAK31516.1|  576|Caenorhabditis elegans Hypothetical
           protein F36H5.5 protein.
          Length = 576

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 602 HTFVGAYAHSENKRQLSVCFGFLTIENGKVNIXKQLQLN 718
           + F+G  +  E K  +S+   FL ++N  VN  + LQLN
Sbjct: 159 YLFIGLTSDPEMKHIVSILNAFLPVDNVYVNTNQNLQLN 197


>AF016665-6|AAL02468.1|  655|Caenorhabditis elegans Hypothetical
           protein C49D10.10 protein.
          Length = 655

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 316 YTVQQKYIRMPKFNQTLQCPINFPSNIRAK 405
           + V   Y  MP+F +T  CP+  P N + K
Sbjct: 622 FRVNGIYANMPQFAETFNCPLGSPMNPKKK 651


>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 332  NIFGCRNLIKRYSALSISPAISGQRRGERGLSSGKLF*LLNVHMNKLPTDKVEK*LPM 505
            N FG R L K Y    I   +  +   +  +    +F  LNV MN+   + +EK L +
Sbjct: 1307 NYFGSRGLWKNYLEAMICRILENENAEQELVIENSIFKHLNVSMNRKNKNLLEKLLQL 1364


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 332  NIFGCRNLIKRYSALSISPAISGQRRGERGLSSGKLF*LLNVHMNKLPTDKVEK*LPM 505
            N FG R L K Y    I   +  +   +  +    +F  LNV MN+   + +EK L +
Sbjct: 1307 NYFGSRGLWKNYLEAMICRILENENAEQELVIENSIFKHLNVSMNRKNKNLLEKLLQL 1364


>Z81564-9|CAB04575.1|  724|Caenorhabditis elegans Hypothetical
           protein K05C4.9 protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = -3

Query: 354 KFRHPNIFLLHSIFTL*L--TSRGFGNHL 274
           K++   ++LLHSIF++ L  T RGF N++
Sbjct: 607 KWKSDRLYLLHSIFSILLNQTRRGFRNYV 635


>U58726-7|AAP13770.1|  562|Caenorhabditis elegans Amp-activated
           kinase protein 2,isoform c protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 396 DIAGEIDRAL*RLIKFRHPNIFLLHSIFT 310
           D+ G+I R +  L  FRHP+I  L+ + +
Sbjct: 65  DVVGKIRREIQNLSLFRHPHIIRLYQVIS 93


>U58726-6|AAM69095.1|  624|Caenorhabditis elegans Amp-activated
           kinase protein 2,isoform a protein.
          Length = 624

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 396 DIAGEIDRAL*RLIKFRHPNIFLLHSIFT 310
           D+ G+I R +  L  FRHP+I  L+ + +
Sbjct: 127 DVVGKIRREIQNLSLFRHPHIIRLYQVIS 155


>U58726-5|AAM69096.1|  626|Caenorhabditis elegans Amp-activated
           kinase protein 2,isoform b protein.
          Length = 626

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 396 DIAGEIDRAL*RLIKFRHPNIFLLHSIFT 310
           D+ G+I R +  L  FRHP+I  L+ + +
Sbjct: 127 DVVGKIRREIQNLSLFRHPHIIRLYQVIS 155


>AY347273-1|AAR06928.1|  624|Caenorhabditis elegans AMP-activated
           protein kinase alphasubunit 1 protein.
          Length = 624

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 396 DIAGEIDRAL*RLIKFRHPNIFLLHSIFT 310
           D+ G+I R +  L  FRHP+I  L+ + +
Sbjct: 127 DVVGKIRREIQNLSLFRHPHIIRLYQVIS 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,949,884
Number of Sequences: 27780
Number of extensions: 354617
Number of successful extensions: 731
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)