Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_D11
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    28   7.7  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    28   7.7  

>U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical protein
            C16A3.3 protein.
          Length = 1743

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 549  DAPAETTEAELEQADASEDERAEPDLTDEE 460
            DA  E+ E E E  +  EDE  + D +DEE
Sbjct: 1420 DAEEESEEEEEEDEEEVEDEEVDEDASDEE 1449


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 546  APAETTEAELEQADASEDERAEPDLTDEE*P 454
            +PA T  +     D S+D + EP LT+ + P
Sbjct: 1619 SPAYTEHSSFSMDDTSQDAKIEPSLTENQQP 1649


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 546  APAETTEAELEQADASEDERAEPDLTDEE*P 454
            +PA T  +     D S+D + EP LT+ + P
Sbjct: 1619 SPAYTEHSSFSMDDTSQDAKIEPSLTENQQP 1649


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,159,274
Number of Sequences: 27780
Number of extensions: 241408
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)