Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_D02
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 95 4e-20
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 91 7e-19
08_02_0657 - 19749835-19751942,19753123-19753561 37 0.020
01_01_0461 - 3414127-3414867 33 0.33
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 31 1.3
08_01_0899 - 8862275-8862972,8863252-8863332,8863594-8863819 29 4.1
08_01_0601 - 5268520-5271112,5272448-5272950 29 4.1
07_03_1170 - 24505743-24505875,24506087-24506475,24507133-245073... 29 4.1
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 28 9.4
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 95.5 bits (227), Expect = 4e-20
Identities = 47/74 (63%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Frame = -1
Query: 769 ERSRQQQAAAXVMDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRG 590
ER R+ + M+ DE D + EI AHFEE+MK+ARRSVSD DIRKY+ FAQTLQQSRG
Sbjct: 723 ERERRSKENPEAMEEDEVDDIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRG 782
Query: 589 FGTNFRFP-TNAGA 551
FG+ FRF T AGA
Sbjct: 783 FGSEFRFERTEAGA 796
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 91.5 bits (217), Expect = 7e-19
Identities = 43/76 (56%), Positives = 53/76 (69%)
Frame = -1
Query: 769 ERSRQQQAAAXVMDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRG 590
E ++++ M+ DE D + EI AHFEE+MK+ARRSVSD DIRKY+ FAQTLQQSRG
Sbjct: 714 EMEKRRKDNPEAMEEDEVDDIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRG 773
Query: 589 FGTNFRFPTNAGAXRG 542
FGT FRF + G
Sbjct: 774 FGTEFRFADQPASGAG 789
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 36.7 bits (81), Expect = 0.020
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = -1
Query: 703 EISRAHFEEAMKFARRSVSDNDIRKYEMF 617
E++ HF+ AMK AR+SVS+ D+ KYE F
Sbjct: 731 ELTVDHFKSAMKHARKSVSELDVIKYEYF 759
>01_01_0461 - 3414127-3414867
Length = 246
Score = 32.7 bits (71), Expect = 0.33
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 582 PTSDSQQTRELXGGTGTSAGDQPTXQEEGGDDDL 481
PT S ++ + GG G + GD ++GGDDD+
Sbjct: 160 PTCSSMRSLQGHGGGGRAFGDDDDDDDDGGDDDM 193
>12_02_0800 + 23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Frame = -1
Query: 697 SRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQ------SRGFGTNFRFPTNAGAXRGHG 536
+ AH EE +K +R V D + A+ QQ +G R+ G RG G
Sbjct: 1305 NHAHSEE-VKGEKRHVDDYQKSESHENAEQQQQLSHAPRRQGHHNGGRYHRGGGTNRGRG 1363
Query: 535 YFXGRPAHV 509
Y G+P+HV
Sbjct: 1364 YDVGKPSHV 1372
>08_01_0899 - 8862275-8862972,8863252-8863332,8863594-8863819
Length = 334
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 573 DSQQTRELXGGTGTSAGDQPTXQEE 499
DS T E+ GGTG S D+P +EE
Sbjct: 36 DSHITCEVCGGTGHSGNDRPETREE 60
>08_01_0601 - 5268520-5271112,5272448-5272950
Length = 1031
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 623 LVLADVVVGHGAARELHR-LLEVSAANLRNGVFLVHVHNGSGGL 751
LV D G AA +H+ +L+ + A R+ FL HVH+G+ GL
Sbjct: 550 LVETDAAGGRVAAVSVHQAVLDFAQAEARDTNFL-HVHSGAAGL 592
>07_03_1170 -
24505743-24505875,24506087-24506475,24507133-24507369,
24507967-24508136,24510196-24510316
Length = 349
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 436 GGDAPRSRARHSLAVQVVVTPL 501
GGDA ++ HSL+V V+V+PL
Sbjct: 211 GGDADTTQLYHSLSVPVIVSPL 232
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = -1
Query: 682 EEAMKFARRSVSDNDIRKYEMFAQTLQQSRGFGTNFR-FPTNAGAXRGHGYFXGRPAHV 509
EE + A S D K + + L + + FG P A A HG G+P HV
Sbjct: 65 EETRELAFPHFSALDGAKMQQASHVLARQKSFGAESHGIPQYAAAAAVHGAHRGQPPHV 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,484,089
Number of Sequences: 37544
Number of extensions: 366072
Number of successful extensions: 1078
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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