Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_D02
(769 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC122550-1|AAI22551.1| 475|Homo sapiens VCP protein protein. 109 8e-24
BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing prot... 109 8e-24
BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing prot... 109 8e-24
BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein. 109 8e-24
AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing prot... 109 8e-24
AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmi... 109 8e-24
AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein. 109 8e-24
U78772-1|AAB70460.1| 750|Homo sapiens nuclear VCP-like protein ... 31 3.4
U68140-1|AAB70457.1| 856|Homo sapiens nuclear VCP-like protein ... 31 3.4
BC012105-1|AAH12105.1| 659|Homo sapiens NVL protein protein. 31 3.4
>BC122550-1|AAI22551.1| 475|Homo sapiens VCP protein protein.
Length = 475
Score = 109 bits (263), Expect = 8e-24
Identities = 54/81 (66%), Positives = 64/81 (79%), Gaps = 4/81 (4%)
Frame = -1
Query: 766 RSRQQQAAAXVMDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGF 587
R R++Q M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGF
Sbjct: 378 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGF 437
Query: 586 GTNFRFPT----NAGAXRGHG 536
G +FRFP+ AG +G G
Sbjct: 438 G-SFRFPSGNQGGAGPSQGSG 457
>BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 109 bits (263), Expect = 8e-24
Identities = 54/81 (66%), Positives = 64/81 (79%), Gaps = 4/81 (4%)
Frame = -1
Query: 766 RSRQQQAAAXVMDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGF 587
R R++Q M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGF
Sbjct: 709 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGF 768
Query: 586 GTNFRFPT----NAGAXRGHG 536
G +FRFP+ AG +G G
Sbjct: 769 G-SFRFPSGNQGGAGPSQGSG 788
>BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 109 bits (263), Expect = 8e-24
Identities = 54/81 (66%), Positives = 64/81 (79%), Gaps = 4/81 (4%)
Frame = -1
Query: 766 RSRQQQAAAXVMDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGF 587
R R++Q M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGF
Sbjct: 709 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGF 768
Query: 586 GTNFRFPT----NAGAXRGHG 536
G +FRFP+ AG +G G
Sbjct: 769 G-SFRFPSGNQGGAGPSQGSG 788
>BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein.
Length = 644
Score = 109 bits (263), Expect = 8e-24
Identities = 54/81 (66%), Positives = 64/81 (79%), Gaps = 4/81 (4%)
Frame = -1
Query: 766 RSRQQQAAAXVMDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGF 587
R R++Q M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGF
Sbjct: 547 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGF 606
Query: 586 GTNFRFPT----NAGAXRGHG 536
G +FRFP+ AG +G G
Sbjct: 607 G-SFRFPSGNQGGAGPSQGSG 626
>AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 109 bits (263), Expect = 8e-24
Identities = 54/81 (66%), Positives = 64/81 (79%), Gaps = 4/81 (4%)
Frame = -1
Query: 766 RSRQQQAAAXVMDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGF 587
R R++Q M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGF
Sbjct: 709 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGF 768
Query: 586 GTNFRFPT----NAGAXRGHG 536
G +FRFP+ AG +G G
Sbjct: 769 G-SFRFPSGNQGGAGPSQGSG 788
>AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmic
reticulum ATPase protein.
Length = 806
Score = 109 bits (263), Expect = 8e-24
Identities = 54/81 (66%), Positives = 64/81 (79%), Gaps = 4/81 (4%)
Frame = -1
Query: 766 RSRQQQAAAXVMDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGF 587
R R++Q M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGF
Sbjct: 709 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGF 768
Query: 586 GTNFRFPT----NAGAXRGHG 536
G +FRFP+ AG +G G
Sbjct: 769 G-SFRFPSGNQGGAGPSQGSG 788
>AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein.
Length = 806
Score = 109 bits (263), Expect = 8e-24
Identities = 54/81 (66%), Positives = 64/81 (79%), Gaps = 4/81 (4%)
Frame = -1
Query: 766 RSRQQQAAAXVMDMDEEDPVPEISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQSRGF 587
R R++Q M+++E+DPVPEI R HFEEAM+FARRSVSDNDIRKYEMFAQTLQQSRGF
Sbjct: 709 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGF 768
Query: 586 GTNFRFPT----NAGAXRGHG 536
G +FRFP+ AG +G G
Sbjct: 769 G-SFRFPSGNQGGAGPSQGSG 788
>U78772-1|AAB70460.1| 750|Homo sapiens nuclear VCP-like protein
NVLp.1 protein.
Length = 750
Score = 31.5 bits (68), Expect = 3.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 703 EISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQ 599
++S HFEEA K R S+S D YE ++L +
Sbjct: 716 KVSHKHFEEAFKKVRSSISKKDQIMYERLQESLSR 750
>U68140-1|AAB70457.1| 856|Homo sapiens nuclear VCP-like protein
NVLp.2 protein.
Length = 856
Score = 31.5 bits (68), Expect = 3.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 703 EISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQ 599
++S HFEEA K R S+S D YE ++L +
Sbjct: 822 KVSHKHFEEAFKKVRSSISKKDQIMYERLQESLSR 856
>BC012105-1|AAH12105.1| 659|Homo sapiens NVL protein protein.
Length = 659
Score = 31.5 bits (68), Expect = 3.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 703 EISRAHFEEAMKFARRSVSDNDIRKYEMFAQTLQQ 599
++S HFEEA K R S+S D YE ++L +
Sbjct: 625 KVSHKHFEEAFKKVRSSISKKDQIMYERLQESLSR 659
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,735,968
Number of Sequences: 237096
Number of extensions: 1879318
Number of successful extensions: 4259
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4255
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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