Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_D01
(309 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 32 0.022
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 26 1.1
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 26 1.1
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 26 1.1
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 1.9
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 24 4.5
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 24 5.9
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 5.9
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 24 5.9
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 23 7.9
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 23 7.9
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 31.9 bits (69), Expect = 0.022
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = +2
Query: 179 NSSSNNEKTRKNFVPHYSKFSYPKLHK----CFRSENNSDH 289
N N+ KTR++F PH S S+ LH+ F SEN S H
Sbjct: 199 NLLGNDSKTRQSFPPHSSSSSHNSLHEPVIYDFSSENPSIH 239
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 1.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 200 KTRKNFVPHYSKFSYPKLHKCFRSENNSD 286
+T K +P + + YP LHK F SEN D
Sbjct: 793 RTVKTLLPAFKEQVYPILHK-FVSENEKD 820
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 26.2 bits (55), Expect = 1.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 224 HYSKFSYPKLHKCFRSENNSD 286
H SK+S P+LH F N+D
Sbjct: 142 HASKYSVPELHTTFLPNTNAD 162
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 1.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 5 FTTSIIRDXFQAIHFIRITSKPHIPLVQRTTPSIS 109
F + RD + F+ KPH LV+ + PS++
Sbjct: 80 FDFDVCRDCYAKQAFLHPCPKPHFVLVRSSIPSVA 114
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.4 bits (53), Expect = 1.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 149 YMIKTPAR*TNSSSNNEKTRKNFVPHYSKFSYPKL 253
Y IK P TN S K + F+P Y+K P+L
Sbjct: 408 YPIKPP---TNISEIPRKLKSGFIPPYAKRVVPRL 439
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 24.2 bits (50), Expect = 4.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 241 REFRIMWYEILPSFFIITAAVGLPGWGLY 155
+EF +W IL + FII++ + GLY
Sbjct: 342 KEFYELWNSILQNHFIISSRNIIDSLGLY 370
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 23.8 bits (49), Expect = 5.9
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = +2
Query: 170 R*TNSSSNNEKTRKNFVPHYSKFSYPKLHKC 262
R T NEK K +P +F H+C
Sbjct: 1702 RHTKCHRRNEKNEKEIIPDTCRFGDEFTHRC 1732
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 23.8 bits (49), Expect = 5.9
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 185 SSNNEKTRKNFVPHYSKFSY 244
SS+ E+TRK F H++ F +
Sbjct: 78 SSSYEQTRKPFFHHFNPFEF 97
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 23.8 bits (49), Expect = 5.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -3
Query: 307 NEFGRPMVTVIFRT 266
NEFGRP + FRT
Sbjct: 383 NEFGRPCINGYFRT 396
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 23.4 bits (48), Expect = 7.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 233 KFSYPKLHKCFRSE--NNSDHRPAEFI 307
KF YPKLH +++ NNS A ++
Sbjct: 174 KFRYPKLHAALQAQLANNSGSFSASWL 200
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 23.4 bits (48), Expect = 7.9
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = -3
Query: 163 GLYHIHNLTLGNHYRRSLTDRWSRALYQRDMRLTGN 56
G+++ HN T+G + + ++R R+ D + G+
Sbjct: 333 GVHNFHNFTVGQAFHQKNSNRVIRSFTASDPFMIGD 368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,295,089
Number of Sequences: 5004
Number of extensions: 23175
Number of successful extensions: 55
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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