Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_D01
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 29 0.98
04_04_0584 + 26381220-26381232,26381583-26381594,26381921-263820... 29 0.98
04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278 29 0.98
01_07_0167 - 41613834-41613842,41614060-41615056,41615456-416163... 29 0.98
03_01_0337 + 2664648-2664670,2664752-2664838,2664930-2665095,266... 27 2.3
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973... 27 4.0
08_01_0245 + 2023442-2023786,2024485-2024841,2024951-2025393,202... 27 4.0
01_07_0302 - 42611150-42611812,42611881-42611961,42612064-426121... 27 4.0
04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680 26 5.2
04_01_0338 + 4424928-4425072,4425158-4425233,4425350-4425515,442... 26 5.2
08_01_1058 + 10765837-10766325 26 6.9
04_04_1261 - 32186769-32186909,32188493-32188612,32188742-32189065 26 6.9
>07_01_0024 +
159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 28.7 bits (61), Expect = 0.98
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 200 KTRKNFVPHYSKFSY-PKLHKCFRSENNS 283
+TRKNF+P YSK + P +H SE +
Sbjct: 481 RTRKNFIPVYSKTDFCPFIHSTALSEGTN 509
>04_04_0584 +
26381220-26381232,26381583-26381594,26381921-26382028,
26382137-26382217,26382320-26382465,26382550-26382624,
26382709-26382756,26382845-26382994,26383081-26383140,
26383394-26384274,26384674-26385670,26385887-26385895
Length = 859
Score = 28.7 bits (61), Expect = 0.98
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 200 KTRKNFVPHYSKFSY-PKLHKCFRSENNS 283
+TRKNF+P YSK + P +H SE +
Sbjct: 555 RTRKNFIPVYSKTDFCPFIHSTALSEGTN 583
>04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278
Length = 368
Score = 28.7 bits (61), Expect = 0.98
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 200 KTRKNFVPHYSKFSY-PKLHKCFRSENNS 283
+TRKNF+P YSK + P +H SE +
Sbjct: 64 RTRKNFIPVYSKTDFCPFIHSTALSEGTN 92
>01_07_0167 -
41613834-41613842,41614060-41615056,41615456-41616336,
41616437-41616508,41616590-41616649,41616736-41616885,
41616974-41617021,41617107-41617181,41617266-41617411,
41617514-41617594,41617703-41617810,41618046-41618057,
41618137-41618148,41618499-41618546,41619021-41619105
Length = 927
Score = 28.7 bits (61), Expect = 0.98
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 200 KTRKNFVPHYSKFSY-PKLHKCFRSENNS 283
+TRKNF+P YSK + P +H SE +
Sbjct: 623 RTRKNFIPVYSKTDFCPFIHSTALSEGTN 651
>03_01_0337 +
2664648-2664670,2664752-2664838,2664930-2665095,
2665817-2665891,2666931-2667038
Length = 152
Score = 27.5 bits (58), Expect = 2.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 302 IRPADGHCYFPNENTCVTWDTR 237
I+ +GHC+ +N +WD+R
Sbjct: 67 IKIPEGHCWVEGDNAACSWDSR 88
>11_06_0047 +
19595904-19596185,19596284-19596424,19597195-19597307,
19597970-19598049,19598557-19598720,19598931-19599060,
19599155-19599254,19599452-19599500,19599775-19599849,
19600026-19600124,19600745-19600823,19600897-19601045,
19601334-19601393,19601490-19601684
Length = 571
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 208 PSFFIITAAVGLPGWGLYHIHNLTLGNHYRRS 113
P+F ITAAVG+ WG + +L YR S
Sbjct: 305 PNFSRITAAVGIWSWGAISLAFASLVMFYRVS 336
>08_01_0245 +
2023442-2023786,2024485-2024841,2024951-2025393,
2025475-2025569,2026302-2026477
Length = 471
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 16 NYPGXLPSHSLHKDYQ*ASYPSGTTHDSI 102
+YPG P HS KD A Y S T +++
Sbjct: 384 DYPGVGPEHSFLKDIGRAEYDSVTDQEAL 412
>01_07_0302 -
42611150-42611812,42611881-42611961,42612064-42612150,
42612283-42612378,42612479-42612543,42612919-42612975,
42613066-42613147,42613235-42613327,42613714-42613785,
42613881-42613985
Length = 466
Score = 26.6 bits (56), Expect = 4.0
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -3
Query: 151 IHNLTLGNHY--RRSLTDRWSRALYQRDMRLTGNPY-EVNGL 35
I NL LGN+ RRS + S Y R++ L GNP E +GL
Sbjct: 202 ILNLDLGNNLIERRSDLEVLSELHYLRNLNLQGNPIAEKDGL 243
>04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680
Length = 936
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 169 GWGLYHIHNLTLGNHYRRSLTDRWSRALYQRDMRLTGNPYEVNGLE 32
GW ++H TL N + S+ +R+ ++ +PYE+NGL+
Sbjct: 342 GWRIFH---RTLSNGLQGSMILVTTRSSKVANLVSNSDPYELNGLQ 384
>04_01_0338 +
4424928-4425072,4425158-4425233,4425350-4425515,
4425669-4425791
Length = 169
Score = 26.2 bits (55), Expect = 5.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 287 GHCYFPNENTCVTWDTR 237
GHC+ +N V+WD+R
Sbjct: 109 GHCWVEGDNPDVSWDSR 125
>08_01_1058 + 10765837-10766325
Length = 162
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 168 PGRPTAAVIMKKLGRISYHIILNSRIPSYTSVFVRKITVTIGRPNS 305
P P+A ++ + I++ + +PS +S R+ T ++GRP++
Sbjct: 41 PAAPSAQCRRRRPPGSAVIIVVLTALPSSSSQHHRRCTASVGRPSA 86
>04_04_1261 - 32186769-32186909,32188493-32188612,32188742-32189065
Length = 194
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 242 YPKLHKCFRSENNSDHR 292
YP +H C RS N +DH+
Sbjct: 64 YPAVHGCPRSNNATDHQ 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,919,095
Number of Sequences: 37544
Number of extensions: 133965
Number of successful extensions: 319
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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